Fig. 4.

Phylogenetic clustering of the Staphylococcus epidermidis population and Epidome gene targets. a Unrooted phylogeny of 842 S. epidermidis genomes based on 86,139 core genome SNPs. Major lineages as well as clinical important multidrug-resistant lineages are highlighted. b Unrooted phylogeny of the concatenated sequence of the Epidome target genes across the S. epidermidis population depicting the lineage origin of all targets. Both phylogenies were annotated using iTol. Scale bars indicate substitutions per site