Table 2.

Number of samples identified containing each G. duodenalis assemblage or G. muris with number of unique nucleotide sequence of the beta-giardin gene identified using next generation amplicon sequencing at both 98% and 100% clustering thresholds.

Assemblage/species	No. of samples positive	No. of unique nucleotide sequences at 98% clustering	No. of unique nucleotide sequences at 100% clustering
A	6	1	2
B	5	4	8
C	4a	2	4
D	6	4	7
E	16b	7	14
F	4	2	2
G. muris	1	1	2

^aTwo from mixed infection.

^bFive from mixed infection.