Antibodies |
|
Mouse anti-CD68 Monoclonal Antibody |
Abcam |
Cat# ab955, RRID:AB_307338
|
Rabbit anti-Osteopontin antibody |
Abcam |
Cat# ab8448, RRID:AB_306566
|
Mouse anti M-CSF R antibody |
R & D Systems |
Cat# MAB3291, RRID:AB_2292260
|
IL6R antibody (Tocilizumab) |
Roche |
N/A |
Rabbit anti-Albumin Antibody |
Sigma-Aldrich |
Cat# A0433, RRID:AB_257887
|
Goat anti Osteopontin antibody |
R & D Systems |
Cat# AF1433, RRID:AB_354791
|
|
Biological Samples |
|
Human Serum samples |
University of Michigan |
N/A |
Human Serum samples |
Genentech clinic trial for Tociilizmab |
FaSScinate(NCT01532869)/FcuSSced (NCT02453256) cohorts |
Human blood samples |
Genentech |
N/A |
Human healthy lung samples |
Northern California Transplant Donor Network |
N/A |
Human SSc lung samples |
UCSF |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Recombinant human OPN |
Sigma-Aldrich |
SRP3131 |
Human serum albumin |
Sigma-Aldrich |
A9080 |
Recombinant human IL6 |
R & D Systems |
206-IL |
Recombinant human MCSF |
R & D Systems |
216-MC |
|
Critical Commercial Assays |
|
Human Osteopontin Quantikine ELISA Kit |
R & D Systems |
DOST00 |
Simple Plex Cartridge Kit for OPN |
Bio Techne |
SPCKB-PS-000232 |
Bio-Plex Pro Human Cytokine 48-plex assay |
Bio Rad |
12007283 |
CellTiter-Glo Luminescent Cell Viability Assay |
Promega |
G7570 |
Chromium Single Cell 3′ Library and Gel bead kit v2 |
10x Genomics |
PN-120267 |
Pan monocytes isolation kit, human |
Miltenyi Biotec |
130-096-537 |
|
Deposited Data |
|
RNA seq for IC stimulated monocytes |
GSE155687 |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155687 |
scRNA seq for fibrotic lung |
GSE159354 |
|
|
Experimental Models: Cell Lines |
|
Primary human lung fibroblast cells |
ATCC |
PCS201013 |
|
Software and Algorithms |
|
JMP |
SAS Institute |
SCR_014242 |
Prism 7 |
GraphPad |
SCR_005375 |
Seurat R package version 3.1.1 |
|
https://satijalab.org/seurat |