Table 3. Representative up-regulated genes in the NJ-treated seed of O. minora).
| HATb) | Contig | Fold change c) | Descriptiond) |
|---|---|---|---|
| 0.5 | comp34798_c0_seq1 (down-regulated at 3 HAT) | 8.7 | SEC61 BETA1, COBRA-LIKE PROTEIN-7 PRECURSOR, putative membrane-anchored cell wall protein |
| comp65219_c0_seq4 (up-regulated at 48 HAT) | 3.0 | PP2C CLADE D 5, protein phosphatase 2C family protein | |
| comp33755_c0_seq1 (down-regulated at 3 and 48 HAT) | 9.2 | Plant invertase/pectin methylesterase inhibitor superfamily protein | |
| comp59432_c0_seq2 | 5.7 | GARACTURONOSYL TRANSFERASE-LIKE 9, encodes a protein with putative galacturonosyltransferase activiy | |
| comp68818_c0_seq1 (down-regulated at 3 HAT) | 6.2 | SUGAR TRANSPORTER 1, encodes a H+/hexose cotransporter | |
| comp232524_c0_seq1 (down-regulated at 3 HTA) | 4.9 | Protein kinase superfamily protein | |
| comp68094_c0_seq11 | 5.4 | RECEPTOR LIKE PROTEIN 54 | |
| 3 | comp92283_c0_seq1 (up-regulated at 48 HAT) | 6.7 | MYB55, encodes a putative transcription factor |
| 48 | comp34269_c0_seq1 | 3.2 | DROUGHT-INDUCED 8, RESPONSIVE TO ABA 18, belongs to the dehydrin protein family, ABA- and drought-induced glycine-rice dehydrin protein |
| comp68110_c0_seq1 | 5.3 | LATE EMBRYOGENESIS ABUNDANT 1, encodes an ABA-induced protein that accumulates during seed maturation | |
| comp64405_c0_seq5 | 2.2 | RNA-BINDING PROTEIN 25, an alternative splicing factor involved in mediation of abiotic stress and ABA responses | |
| comp33799_c0_seq1 | 2.4 | Leucin-rich repeat (LRR) family protein | |
| comp47352_c0_seq1 | 2.2 | KEEP ON GOING, encodes a RING E3 ligase involved in ABA signaling | |
| comp67868_c0_seq5 | 2.6 | Leucin-rich repeat (LRR) family protein |
a) Full list of the differentially expressed genes is available as supplemental materials. b) Hours after GR24 treatment. c) Ratio of normalized count of contig in the NJ-treated O. minor seed to that in the non-treated seed. d) Description for homolog in A. thaliana in TAIR database.