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. 2020 Aug 31;161(4):291–302. doi: 10.1111/imm.13239

Table 1.

Characteristics of the public sepsis datasets used for validation

GSE ID GSE49755 GSE49756 GSE49757 GSE30119 GSE64457 GSE25504 GSE13015 GSE26440
Title A Transcriptomic Reporter Assay Employing Neutrophils to Measure Immunogenic Activity of Septic Patients Plasma ‐ Neutrophils, experiment I A Transcriptomic Reporter Assay Employing Neutrophils to Measure Immunogenic Activity of Septic Patients Plasma ‐ Neutrophils, experiment II A Transcriptomic Reporter Assay Employing Neutrophils to Measure Immunogenic Activity of Septic Patients Plasma ‐ Neutrophils, experiment III ‐ Genome‐wide analysis of whole blood transcriptional response to community‐acquired Staphylococcus aureus infection in vivo Marked alterations of neutrophil functions during sepsis‐induced immunosuppression‐ Whole blood mRNA expression profiling of host molecular networks in neonatal sepsis Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis‐ Expression data for derivation of septic shock subgroups
References (PMID) Khaenam et al. (24612859) Khaenam et al. (24612859) Khaenam et al. (24612859) Banchereau et al (22496797) Demaret et al. (27568821) Dickinson et al. (26484146), Smith et al. (25120092) Pankla et al. (19903332) Wong et al. (19624809)
Samples 40 49 56 143 23 63 39 130
Species Homo sapiens Homo sapiens Homo sapiens Homo sapiens Homo sapiens Homo sapiens Homo sapiens Homo sapiens
Population age demographics Adult Adult Adult Paediatric Adult Paediatric Adult Paediatric
Population geographic location Asia Asia Asia North America Europe Europe and Africa Asia North America
Entry criteria Cultured‐confirmed sepsis Culture‐confirmed sepsis Culture‐confirmed sepsis Culture‐confirmed sepsis Sepsis shock diagnosis Suspicion of infection, later confirmed by positive cultures Culture‐confirmed sepsis Sepsis shock diagnosis
Assay type Microarray Microarray Microarray Microarray Microarray Microarray Microarray Microarray
Microarray manufacturer Illumina Illumina Illumina Illumina Affymetrix Illumina Illumina Affymetrix
Study type In vitro (cultured with plasma for 6 hr) In vitro (cultured with plasma for 6 hr) In vitro (cultured with plasma for 6 hr) In vivo Ex vivo In vivo Ex vivo In vivo
Cell Type Neutrophils Neutrophils Neutrophils Whole Blood Neutrophils Whole Blood Whole Blood Whole Blood
Group A Uninfected Uninfected Uninfected Control Healthy Control Neonatal Sepsis Control Healthy Normal Control
Group B Septic Septic Septic Staphylococcus aureus infection Septic Patient Infected Melioidosis Septic Shock Patient
ANXA3 Exp A 117 34·01 59·09 94·95 1157·40 185·87 18·77 4·17
ANXA3 Exp B 358 223·01 233·59 314·58 2789·04 506·61 253·04 24·91
B/A 3·1 6·55 3·96 3·29 2·41 2·72 11·92 2·19
t‐test < 0·05 0·02 0·002 < 0·001 0·002 < 0·001 < 0·001 < 0·001
F‐test < 0·001 < 0·001 < 0·001 < 0·001 0·48 < 0·001 < 0·001 < 0·001
Dataset GXB Link http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000072 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000073 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000074 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000136 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000127 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000104 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000130 http://sepsis.gxbsidra.org/dm3/geneBrowser/show/4000102
ANXA3 GXB Link http://sepsis.gxbsidra.org/dm3/miniURL/view/Pk http://sepsis.gxbsidra.org/dm3/miniURL/view/OP http://sepsis.gxbsidra.org/dm3/miniURL/view/OU http://sepsis.gxbsidra.org/dm3/miniURL/view/OL http://sepsis.gxbsidra.org/dm3/miniURL/view/Pj http://sepsis.gxbsidra.org/dm3/miniURL/view/ON http://sepsis.gxbsidra.org/dm3/miniURL/view/OT http://sepsis.gxbsidra.org/dm3/miniURL/view/OS