. 2020 Oct 29;11(11):1278. doi: 10.3390/genes11111278

Table 2.

Detected mutations or variants in the resequenced accessions.

Accession	ID	Name	fas	fw2.2	lc	SUN	fw3.2	ovate	fw11.3	c	gf	nor	og^c	r	s	sp	t³¹⁸³	u	ug	y	j-2
RF_001	LA2706	Moneymaker	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-
RF_002	LA2838A	Ailsa Craig	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_003	PI406760	Gardeners Delight	-	+	p	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
RF_004	LA1090	Rutgers	-	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_005	-	Galina (Galina’s yellow)	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-
RF_006	-	Ponderosa	+	+	+	-	+	-	+	-	-	-	-	-	-	-	+/-	-	-	-	-
RF_007	-	Katinka Cherry	-	+	p	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-
RF_008	-	John’s big orange	-	+	+	-	+	-	+	-	-	-	-	-	-	+	+	+	-	-	-
RF_011	LA2463	All Round	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-
RF_012	LYC 1969	Sonato	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-
RF_013	LYC 3897	Cross Country	-	+	-	-	-	+	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_014	LYC 3476	Lidi	-	+	-	-	+	+	-*	-	-	-	-	+	+	-	-	-	-	-	-
RF_015	-	Momatero	-	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_016	CGN15464	Rote Beere	-	p/+	p	-	-	-	-*	-	-	-	-	-	-	-	-	-	-	-	-
RF_017	LYC 3340	“Lycopersicon esculentum Mill.”	-	+	p	-	-	-	-*	-	-	-	-	+/-	-	-	-	-	-	-	-
RF_018	-	DANA	+	+	+/-	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_019	-	Large Pink	+	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-
RF_020	TLYC 3153	“L. esculentum Mill.”	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_021	T 828	Bolivar	+	+	+	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_022	PI 129097	“L. esculentum”	-	+	x/-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_023	PI 272654	“L. esculentum”	-	x	-	-	-	-	-*	-	-	-	-	-	-	-	-	-	-	+	-
RF_024	-	Jersey Devil	-	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_026	-	Polish Joe	+	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_027	CGN20815	Cal J TM VF	-	+	-	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	+
RF_028	PI 303721	The Dutchman	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	+	-	+	-
RF_029	LA4451	Black Cherry	-	p	p	-	+	-	-	-	+	-	+	-	-	-	-	-	-	+	-
RF_030	V710092	ANTO	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	-	-
RF_031	PC711092	Winter Tipe (nor)	-	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-
RF_032	PI 93302	Chang Li	-	+	-	-	-	+	-*	-	-	-	-	+	-	-	-	-	-	-	-
RF_033	SG 16	Belmonte	+	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_034	-	Tiffen mennonite	+	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-
RF_035	PI 203232	Wheatley’s Frost Resistant	-	+	-	-	-	+	-*	-	-	-	-	-	-	-	-	-	-	+	-
RF_036	PI 311117	“L. esculentum”	-	x	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_037	LA1324	“L. esculentum”	-	p	p	-	-	-	-/+	-	-	-	-	-	-	-	-	+	-	-	-
RF_038	PI 158760	Chih-Mu-Tao-Se	-	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_039	LA0113	“L. esculentum”	-	p-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_040	LYC 1410	ES 58 Heinz	-	+	+	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_041	PI 169588	Dolmalik	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_042	LYC 2962	Ventura	-	p	p	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
RF_077	-	Large Red Cherry	-	+	-	-	-	-	-*	-	-	-	-	-	-	-	-	-	-	-	-
RF_078	-	Porter	-	+	-	+	+	+	-*	-	-	-	-	-	-	-	-	-	-	+	-
RF_088	-	Bloody Butcher	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_089	-	Brandywine	+	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-
RF_090	-	Dixy Golden Giant	+	+	+	-	+	-	+	+	-	-	-	-	-	-	+	-	-	-	-
RF_091	-	Giant Belgium	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_093	-	Kentucky Beefsteak	+	+	+	-	+	-	+	-	-	-	-	-	-	-	+	-	-	+	-
RF_094	LA1504	Marmande VFA	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_096	-	Thessaloniki	-	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
RF_097	-	Watermelon Beefsteak	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_102	LA4133	“var. cerasiforme”	-	+	-	-	-	-	-*	-	-	-	-	-	-	-	-	-	-	-	-
RF_103	LA1421	“var. cerasiforme”	-	p/-	x/-	?	-	-	-/-*	-	-	-	-	-	-	-	-	-	-	+/-	-
RF_105	LA1479	“var. cerasiforme”	-*	p	p	-	-	-	-*	-	-	-	-	-	-	-	-	-	-	-	-
RF_201	-	Blondokee	+	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_203	-	Snowstorm	-	+	+/-	-	+/-	-	+	-	-	-	-	r/-	-	-	-	-	+	+/-	-
RF_206	-	ABC Potato Leaf	+	+	+/-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-
RF_214	LA4345	Heinz 1706 (reference)	-	+	-	-	+	+	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_216	CGN15882	Sonora	-	+	+	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_226	PI 320468	DL/67/248	-	p	-	-	+	-	-*	-	-	-	-	-	+	-	-	-	-	-	-
RF_227	PI 324065	Nagcarlan	+	x	-	-	+	+	-*	-	-	-	-	-	-	+	-	-	-	+	-
RF_229	PI 372385	Morne a L’Eau	-	+	+	-	+	-	-*	-	-	-	-	-	-	-	-	-	-	+	-
RF_232	2K6-6003	OH88119	-	+	-	-	+	-	+	-	-	-	-	-	-	+	-	+	+	-	+
RF_233	2K6-6036	NCEBR2	-	+	+	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	+
RF_234	2K6-6040	981136	-	+	-	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	+
RF_235	T 519	Kecskemeti Koria Bibor	-	+	+	-	+	-	+	-	-	-	-	-	-	+	-	+	-	-	-
RF_236	-	Grosse Cotelee	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-
RF_237	PI 379007	“var. cerasiforme”	n	p	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
RF_238	-	RZ26	n	p	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-

For fas (“-”: absent, as in reference; “+”: present; “n”: new allele). For fw2.2 (“-”: ancestral allele; “+”: modern allele for large fruit; “p”: pimpinellifolium-like allele; “x”: allele of unknown origin). For lc (“-”: ancestral allele; “+”: high number allele; “p”: pimpinellifolium allele; “x”: allele of unknown origin). For sun (“+”: presence of the duplicated /translocated copy; “-”: ancestral allele). For fw3.2 (“+”: modern large fruit size allele; “-”: ancestral allele). For ovate (“+”: presence of the allele; “-”: absence). For fw11.3 (“+”: modern allele, as in reference; “-”: wild ancestral allele as in S. pimpinellifolium (a 22 nt deletion and large insertion compared to the reference); “-*”: appears to have only the derived 22 nt insertion). For r (“+”: r^y allele; “r”: alternative mutant r allele; “-”: wild type). For all other genes, “+” represents the presence of the mutant allele, and “-” that of the wild type allele.