Table 2.
cDNA | Protein | Effect | CADD score | DANN score | GERP++ NR | GERP++ RS | GERP++ RS rank score | MetaLR pred | MetaLR score | MetaSVM pred | MetaSVM score | MutationTaster pred | MutationTaster score | Fathmm‐MKL coding pred | Fathmm‐MKL coding score | gnomAD exomes AC | gnomAD exomes AF | gnomAD genomes AC | gnomAD genomes AF |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_015634.4:c.68A>G | NP_056449.1:p. Glu23Gly | Missense | 28.7 | 0.998 | 5.73 | 5.73 | 0.896 | T | 0.1142 | T | 0.831 | D | 1 | D | 0.877 | 420 | 0.001707 | 181 | 0.005845 |
NM_015634.4:c. 565C>T | NP_056449.1:p. Pro189Ser | Missense | 18.03 | 0.982 | 5.79 | 3.85 | 0.433 | T | 0.043 | T | 1.047 | D | 0.997 | D | 0.553 | 0 | 0 | 0 | 0 |
NM_015634.4:c.1279A>G | NP_056449.1:p. Ser427Gly | Missense | 28.1 | 0.998 | 5.62 | 5.62 | 0.856 | T | 0.462 | T | 0.013 | D | 1 | D | 0.993 | 6 | 2.44E‐05 | 2 | 6.46E‐05 |
Abbreviations: A, disease‐causing automatic; cDNA, complementary DNA; D, disease causing; T, tolerated.