Figure 3.

Polished screenshot of the RIBAP table displaying hctB genes encoding histone H1-like protein Hc2 (group 787) in 26 strains, their homology levels (color table) and a dendrogram based on multi-sequence alignment and FastTree. Displayed for each RIBAP group are the group size and all involved strains, as well as gene name and gene description for each strain. The corresponding assignment to Roary runs with sequence identities of 60, 70, 80, 90 and 95% is color coded in their respective groups. On the left-hand side, a phylogenetic tree is displayed, which is generated from the MSA of the CDS within this RIBAP group. Alignment and tree are provided for download. The full HTML table can be found in the OSF repository.