Table 6.
Characteristics of the strains included in this study.
| Species | Strain 1 | Source | NCBI acc. no. | ENA | de novo seq. (Source) |
|---|---|---|---|---|---|
| Chlamydia abortus | Cab_16DC122 | Muscovy duck | FLI 2 | ||
| Cab_C18-98 (B577T) | Sheep | SAMEA1094359 | |||
| Cab_S26-3 | Sheep | NC_004552.2 | |||
| Chlamydia avium | Cav_10DC88T | Pigeon | NZ_CP006571.1 | GCA_000583875.1 ASM58387v1 |
|
| Cav_11DC096 | Pigeon | FLI 2 | |||
| Cav_12DC097 | Pigeon | FLI 2 | |||
| Cav_14DC103 | Pigeon | FLI 2 | |||
| Chlamydia caviae | Cca_GPICT | Guinea pig | NC_003361.3 | ||
| Chlamydia felis | Cfe_Fe-C56T | Cat | NC_007899.1 | ||
| Chlamydia gallinacea | Cga_08-1274-3T | Chicken | NZ_CP015840.1 | ||
| Cga_12-4358 | Chicken | ANSES 3 | |||
| 4 contigs | Cga_13DC099 | Turkey | FLI 2 | ||
| 3 contigs | Cga_14DC100 | Chicken | FLI 2 | ||
| 3 contigs | Cga_14DC101 | Chicken | FLI 2 | ||
| Cga_JX-1 | Chicken |
NZ_CP019792.1. CP019792.1 |
GCA_002007725.1. ASM200772v1 |
||
| Cand. Chlamydia ibidis | Cib_10-1398-6 | Ibis | NZ_APJW01000001.1 | ||
| Chlamydia muridarum | Cmu_NiggT | Mouse | NC_002620.2 | ||
| Chlamydia pecorum | Cpe_E58T | Cattle | NC_015408.1 | ||
| Chlamydia pneumoniae | Cpn_TW-183T | Human | NC_005043.1 | ||
| Chlamydia psittaci | Cps_02DC15 | Cattle | NC_017292.1 | GCA_000415545.1 | |
| Cps_08DC60 | Human | NC_017290.1 | GCA_000270445.1 | ||
| Cps_6BCT | Parakeet | NC_015470.1 | GCA_000191925.1 | ||
| Cps_CP3 | Pigeon | NC_018625.1 | GCA_000298535.2 | ||
| Cps_GR9 | Duck | NC_018620.1 | GCA_000298415.1 | ||
| Cps_Mat116 | Psittacine | CP002744.1 | |||
| Cps_MN | Human | NC_018627.1 | GCA_000298435.2 | ||
| Cps_NJ1 | Turkey | CP003798.1 | |||
| Cps_VS225 | Psittacine | CP003793.1 | |||
| Cps_WS-RT-E30 | Duck | NC_018622.1 | GCA_000298475.2 | ||
| Chlamydia suis | Csu_1-25a | Swine | FTQL01000001 | ||
| Chlamydia trachomatis | Ctr_434-Bu | Human | NC_010287.1 | ||
| Ctr_A-HAR-13T | Human | NC_007429.1 | |||
| Ctr_D-UW-3-CX | Human | NC_000117.1 |
1 superscript T = type strain. 2 Chlamydia & Mycoplasma Group, Inst. Molec. Pathogenesis, Friedrich-Loeffler-Institut, Jena, Germany. 3 ANSES, Bacterial Zoonoses Unit, Maisons-Alfort, France.