Table 1.

Twenty-one of the top 100 discordantly expressed genes (positive protein LFC but negative transcript LFC) also found to be present in the published Human Plasma Peptide Atlas consisting of 1929 canonical protein sequences [28]. Shown are overlapping genes with respective LFC, rank and average rank values. Table S3C details discordantly expressed proteins also identified in the human plasma proteome reference set.

Gene Symbol	Protein Name	LFC Transcript	Rank Transcript	LFC Protein	Rank Protein	Average Rank
MBP	Myelin basic protein	−1.21	3521	2.05	3234	3377.5
PACS1	Phosphofurin acidic cluster sorting protein 1	−0.51	3218	3.34	3534	3376
APP	Amyloid-beta precursor protein	−0.77	3395	2.26	3318	3356.5
DSP	Desmoplakin	−1.43	3544	1.48	2938	3241
FCGBP	IgGFc-binding protein	−0.46	3156	2.11	3264	3210
LAMP2	Lysosome-associated membrane glycoprotein 2	−0.71	3369	1.64	3043	3206
BOLA2B	BolA-like protein 2	−0.28	2823	3.30	3532	3177.5
PTPRF	Receptor-type tyrosine-protein phosphatase F	−1.03	3487	1.33	2828	3157.5
DCN	Decorin	−0.77	3400	1.39	2875	3137.5
AK3	GTP:AMP phosphotransferase AK3, mitochondrial	−0.51	3219	1.58	3006	3112.5
HTRA1	Serine protease HTRA1	−1.47	3550	1.12	2670	3110
OGN	Mimecan	−0.89	3445	1.19	2731	3088
GOLIM4	Golgi integral membrane protein 4	−0.73	3379	1.25	2771	3075
LAMB2	Laminin subunit beta-2	−0.64	3331	1.29	2799	3065
ITM2B	Integral membrane protein 2B	−0.63	3319	1.24	2766	3042.5
SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	−0.31	2870	1.90	3175	3022.5
CST3	Cystatin-C	−0.38	3034	1.51	2962	2998
LTBP4	Latent-transforming growth factor beta-binding protein 4	−0.53	3239	1.21	2745	2992
PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	−0.54	3245	1.15	2694	2969.5
HEXA	Beta-hexosaminidase subunit alpha	−0.27	2765	1.87	3163	2964
PCSK1N	ProSAAS	−0.83	3426	0.91	2483	2954.5