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. 2020 Nov 9;12(21):21057–21075. doi: 10.18632/aging.202154

Table 1. MM/GBSA-based binding energy rescoring calculations over MD simulations of computationally-predicted oleacein mimetics.

Candidates ranked by MM/GBSA energy 4JT6 (mTOR) MM/GBSA energy Crystallographic cavity / Best cavity Candidates ranked by MM/GBSA energy 4WXX (DNMT) MM/GBSA energy Crystallographic cavity / Best cavity
oleacein -26.8226 / -36.9331 oleacein -30.567 / -36.5163
CHEMBL1300434 -38.7014 / -27.361 CHEMBL1632504 -38.2609 / -36.6319
CHEMBL2143987 -32.4070 / -40.3344 CHEMBL2143987 -36.4821 / -43.6863
CHEMBL1545778 -30.5493 / -25.0387 CHEMBL2165395 -33.4134 / -25.8227
CHEMBL126593 -29.2106 / -26.6329 CHEMBL1300434 -33.3421 / -33.9773
CHEMBL1085246 -27.4436 / -19.6725 CHEMBL267516 -32.8788 / -28.1508
CHEMBL267516 -27.3710 / -44.6454 CHEMBL1180264 -31.7196 / -32.3981
CHEMBL45196 -27.2624 / -17.1961 CHEMBL357073 -28.4676 / -27.0541
CHEMBL1632504 -25.7896 / -24.6272 CHEMBL1440472 -27.5899 / -29.3600
CHEMBL357073 -25.0102 / -33.5462 CHEMBL1621113 -26.6488 / -29.3269
CHEMBL1366164 -24.3303 / -17.8085 CHEMBL1890048 -26.0912 / -26.2952
CHEMBL1642794 -24.1435 / -19.439 CHEMBL126593 -25.7134 / -35.3592
CHEMBL1621113 -22.9663 / -21.0309 CHEMBL45196 -24.5175 / -32.1555
CHEMBL1950046 -20.2999 / -31.6794 CHEMBL1950046 -24.3167 / -21.7283
CHEMBL2165395 -19.8235 / -27.2639 CHEMBL1079062 -24.2025 / -24.4205
CHEMBL1890048 -19.6392 / -21.2089 CHEMBL1545778 -21.6215 / -22.9832
CHEMBL2172394 -18.4177 / -34.4392 CHEMBL1085246 -17.8140 / -21.8923
CHEMBL1180264 -18.2272 / -29.4140 CHEMBL1642794 -16.1264 / -20.6555
CHEMBL1079062 -17.4413 / -24.7585 CHEMBL1366164 -15.4957 / -19.6201
CHEMBL1440472 -16.6468 / -21.2853 CHEMBL165714 -12.1247 / -30.3770
CHEMBL165714 -16.1321 / -21.4634 CHEMBL2172394 -11.8887 / -31.0757