Table 3.

Table showing the details of the sample number, average read length, number of reads and number of reads mapped to each subgenomic SARS-CoV-2 RNA adjusted so they represent reads normalized to a total of 5 million (5 M) reads for each sample for easier comparison.

Sample	Average read length	Number of reads adjusted to 5 M reads	S Orf2	Orf3a	E Orf4	M Orf5	Orf6	Orf7a	Orf7b	Orf8	N Orf9	Orf10
GC-28/67	76	5 M	0	0	0	0	0	0	0	0	0	0
GC-26/66	207	5 M	563	6190	6351	2026	2471	6798	0	282	7048	0
GC-13/35	149	5 M	3	53	53	28	44	225	0	53	253	0
GC-11/34	73	5 M	33	121	408	263	242	2467	0	1042	146	0
GC-11/38	184	5 M	271	3733	2598	2579	2405	6223	0	615	7683	0
GC-20/63	83	5 M	0	0	512	4	3738	0	0	0	0	0
GC-24/61	115	5 M	0	0	34,928	615	0	11,157	0	0	31,396	0
GC-12/36	163	5 M	0	15	0	0	4	4	0	4	4	0
GC-14/33	153	5 M	13	48	64	83	50	218	0	35	145	0
GC-14/37	185	5 M	234	6537	5472	5335	6299	12,402	0	1480	31,982	0
GC-23/60	150	5 M	196	71	10,689	292	12,473	6637	0	1407	49,629	0
GC-51/62	100	5 M	0	0	0	171	0	38,167	0	0	29,096	0
GC-21/64	92	5 M	0	0	0	147	0	15,680	0	1753	6610	0
GC-25/65	84	5 M	2	10	16,256	1225	16,328	155,642	0	11,755	1805	0
GC-55/68	84	5 M	17	27	45,771	5709	5468	213,562	6	4267	1208	0