Table 5.

Table showing sample details with corresponding Ct values of PCR amplification using specific targets.

Sample	Sample collection date	Leader-7a sub-genomic (Set 1) (Ct)	7a Genomic and sub-genomic (Set 2) (Ct)	Leader-5′-UTR genomic (Set 3) (Ct)	5′-UTR genomic (Set 4) (Ct)	N Gene (Ct)	Orf 1ab (Ct)	S gene (Ct)
NTC		Neg	Neg	Neg	Neg	Neg	Neg	Neg
GC-28/67	28/01/2020	Neg	Neg	Neg	Neg	Neg	Neg	Neg
GC-26/66	7/03/2020	28.9	24.8	25.7	25.9	25.7	26.2	26.7
GC-13/35	23/03/2020	32.2	28.6	29.6	28.8	29.6	28.0	29.1
GC-11/34/38	24/03/2020	24.3	19.7	20.6	21.4	21.3	21.9	22.4
GC-20/63	2/04/2020	Neg	35.3	35.6	35.7	35.8	Neg	Neg
GC-24/61	7/04/2020	Neg	34.8	33.8	36	35.4	35.3	Neg
GC-12/36	24/03/2020	Neg	Neg	Neg	Neg	Neg	Neg	Neg
GC-14/33/37	28/03/2020	21.1	17.5	17.8	18.6	19.3	19	19.7
GC-23/60	8/04/2020	35.9	33.3	32.9	33.3	33.6	32.9	35.2
GC-51/62	14/04/2020	Neg	Neg	Neg	35.9	37	Neg	Neg
GC-21/64	3/04/2020	Neg	Neg	Neg	36.8	36.3	Neg	Neg
GC-25/65	10/04/2020	22.3	18.9	20.1	21	20.4	21.7	22.2
GC-55/68	24/04/2020	19.3	15	15.7	16.1	16.4	16.7	17.5

NTC non-template control (water).