Table 3.
Top performing homology modeling programs in CASP13.
| Rank | Program/Server | Year | Country | Interface | Website | References |
|---|---|---|---|---|---|---|
| 1,3,5 | I-TASSER | 2008 | USA | Server (C++) |
https://zhanglab.ccmb.med.umich.edu/C-I-TASSER https://zhanglab.ccmb.med.umich.edu/C-QUARK/ |
[80], [81], [117] |
| 2,11 | GALAXY | 2012 | South Korea | Server (Python) | http://galaxy.seoklab.org/ | [86], [87], [118] |
| 4 | AlphaFold | 2019 | UK | Package (Python and C++) | https://github.com/deepmind/deepmind-research/tree/master/alphafold_casp13 | [88], [119], [120] |
| 6 | IntFOLD | 2011 | UK | Server or Package | https://www.reading.ac.uk/bioinf/IntFOLD/ | [121] |
| 7,9 | RaptorX | 2012 | USA | Server or Package | http://raptorx.uchicago.edu/ | [85], [116] |
| 8 | VoroMQA | 2017 | Lithuania | Server | http://bioinformatics.ibt.lt/wtsam/voromqa | [122] |
| 10 | SBROD | 2019 | France | Server or Package (C++ and Python) | https://gitlab.inria.fr/grudinin/sbrod | [123] |
| 12 | MULTICOM | 2010 | USA | Server or Package | http://sysbio.rnet.missouri.edu/multicom_cluster/ | [124], [125] |
| 13 | Rosetta | 2004 | USA | Server or Package (C++) | https://www.rosettacommons.org/home | [84], [126] |