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. 2020 Nov 15;9(11):951. doi: 10.3390/pathogens9110951

Table 1.

Significant conserved RNA structural motifs with potential functional roles in IAV segment interactions and genome assembly, as supported by experimental evidence.

vRNA
Segment
Nucleotide Region Predicted Structure Publication
(+) Sense
Numbering
(−) Sense
Numbering
1 1823–1944 398–519 motif with long helical regions and two hairpins [41]
2 289–309 2033–2053 hairpin [19]
497–561 1781–1845 hairpin [41]
5 16–39 1527–1550 hairpin [9,25,33]
22–68 1498–1544 two hairpins [41]
70–82 1484–1496 hairpin [9,19,25]
89–105 1461–1477 hairpin [33]
191–203 1363–1375 hairpin [9,25]
580–590 976–986 hairpin [9,25,33]
922–938 628–644 hairpin [33]
1090–1106 460–476 hairpin [9,25]
1144–1160 406–422 hairpin [9,25]
1431–1479 87–135 hairpin/pseudoknot [9,19,25,33,41,42]
1476–1530 36–90 hairpin [33]
7 21–63 965–1007 dynamic [16,26]
219–240 788–809 hairpin [9,26,39]
249–260 768–779 hairpin [9,26]
318–333 695–710 hairpin [9,26]
443–450 578–585 hairpin [9,26]
671–691 337–357 hairpin [9,26]
857–890 138–171 hairpin [9,26]
967–994 34–61 hairpin [9,16,26,34,36,39,43,44]
8 22–86 790–854 hairpin [41]
96–101/175–180 696–701/775–780 helix [24,38]
109–118/163–172 704–713/758–767 helix [24,38]
128–140 736–748 hairpin [24,38]
257–277 599–619 hairpin [19]
529–534/578–583 293–298/342–347 helix [9,24]
549–564 312–327 hairpin [9,24]
588–615 261–288 hairpin [9,24]