RNA-seq	High-throughput RNA sequencing
KEGG	Kyoto Encyclopedia of Genes and Genomes
SAM	Shoot apical meristem
ABA	Abscisic acid
iTRAQ	Isobaric tags for relative and absolute quantitation
ETR	Electron transfer reactions
PAR	Photosynthetic active radiation
GO	Gene ontology
Nr	Non-redundant protein database
EC	Enzyme Commission
Fri	Frigida
PRR5	Response regulator-like APRR5
GAs	Gibberellins
GAI	Gibberellin insensitive
GI	Gigantea
CO	Constans
TOC1	Timing of cab expression 1
LHY	Late elongated hypocotyl
CCA1	Circadian clock associated 1
qRT-PCR	Quantitative real-time PCR
NADP-ME	NADP dependent malic enzyme
BSP	Bark Storage Proteins
DEGs	Differentially expressed genes
HCD	High-energy collision dissociation
AGC	Automatic gain control