. 2020 Nov 12;11(11):1338. doi: 10.3390/genes11111338

Table 2.

Log-Likelihood values of the site-specific models, with detected sites having dN/dS values > 1.

Gene Name	Models	np	ln L	Likelihood Ratio Test p-Value	Positively Selected Sites
ndhD	M8	15	−2087.368596	0.000000130	385 T 0.951 *
ndhD	M7	13	−2103.224804	0.000000130	385 T 0.951 *
ndhJ	M8	15	−670.195417	0.000000009	151 F 0.995 **
ndhJ	M7	13	−688.698395	0.000000009	151 F 0.995 **
rpoB	M8	15	−4347.768637	0.000000009	248 Q 0.959 *
rpoB	M7	13	−4372.590740	0.000000009	248 Q 0.959 *
rpoC2	M8	15	−5635.415430	0.000000000	748 Y 0.984 ,1338 I 0.983
rpoC2	M7	13	−5656.937844	0.000000000	748 Y 0.984 ,1338 I 0.983
rps16	M8	15	−242.458940	0.000000720	1 M 0.995 **
rps16	M7	13	−256.602491	0.000000720	1 M 0.995 **
ycf1	M8	15	−7160.045295	0.000000000	372 K 1.000 , 373 T 1.000 , 842 F 0.991 , 905 P 0.991 , 1066 R 0.992 , 1142 F 0.991 , 1284 N 1.000 , 1286 D 0.991 , 1359 F 0.999 **
ycf1	M7	13	−7218.177588	0.000000000
ycf2	M8	15	−9220.322295	0.000000000	388 T 0.982 *
ycf2	M7	13	−9248.972947	0.000000000	388 T 0.982 *

* p < 0.05; ** p < 0.01. np represents the degree of freedom.