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. 2020 Nov 14;12(11):1305. doi: 10.3390/v12111305

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© 2020 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Normalised genetic diversity (polymorphism of all genotype II in vivo samples: blue/green lines, divergence between genotype II sequences: black line) versus genomic position, excluding the L protein. Here, the normalised genetic diversity is the running average of genetic diversity across windows of 250 bases, divided by the genome-wide average. NP: nucleocapsid protein, P: phosphoprotein, M: matrix protein, F: fusion protein, HN: haemagglutinin-neuraminidase protein. Blue lines are Leghorn samples (sample_1 to sample_3, dark to light), green lines are Fayoumi samples (sample_1 to sample_2, dark to light).