Table 4.
Codon sites and amino acid substitutions under positive selection pressure.
| Dataset | FEL | FUBAR | MEME | |
|---|---|---|---|---|
| ECSA dataset | 171: nsP1-R171Q 488: nsP1-Q488R 1550: nsP3-H217Y 1695: nsP3-A362V 2418: nsP4-V555I 1020: E1-E211K |
171: nsP-R171Q 1550: nsP3-H217Y 1661: nsP3-Q328P 2418: nsP4-V555I 471: E2-Q146R 1020: E1-E211K |
82: nsP1-C82S 171: nsP1-R171Q 178: nsP1-F178V 753: nsP2-T218I 992: nsP2-I457S 1426: nsP3-A93P 1550: nsP3-H217Y 1661: nsP3-Q328P 1768: nsP3-C435R 1849: nsP3-C516L 2325: nsP4-A462G 2330: nsP4-D467Y |
147: C-A147R 156: C-R156A 467: E2-H142Y 471: E2-Q146R 632: E2-Q307R 795: 6K-A47G/V 955: E1-A146N 1020: E1-E211K 1100: E1-V291I 1191: E1-P382F |
| The present study dataset | 1030: nsP2-N495S 1391: nsP3-V58I 1550: nsP3-H217Y 1695: nsP3-A362V 2228: nsP4-T365A 73: C-K73R 546: E2-K221R |
1391: nsP3-V58I 73: C-K73R |
||
Amino acid positions are within either the nonstructural (ns) or structural polyprotein.