Table 3. Distribution of anti-codons in the chloroplast genome of gymnosperms.
Each of the gymnosperm chloroplast genomes encodes 25 to 30 anticodon-specific tRNAs. E. equisetina encodes 25 anticodons, T. mairei encodes 26 anticodons, C. debaoensis, S. verticillata, and C. lanceolata encode 28 anticodons, and D. spinulosum, C. deodara, W. mirabilis, and R. piresii encode 29 anticodons. Other species comprising W. nobilis, G. gnemon and G. biloba encodes 30 anticodons.
| tRNA Isotypes | Isoacceptors | tRNA Isotypes | Isoacceptors | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C. debaoensis (28) | S. verticillata (28) | |||||||||||||
| Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | |||||
| Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 0 | Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 0 | |||||
| Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | Pro | AGG: 0 | GGG: 0 | CGG: 0 | UGG: 1 | |||||
| Thr | AGU: 0 | GGU: 0 | CGU: 0 | UGU: 1 | Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | |||||
| Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | |||||
| Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | |
| Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | |
| Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | |
| Phe | AAA: 0 | GAA: 1 | Phe | AAA: 0 | GAA: 1 | |||||||||
| Asn | AUU: 0 | GUU: 1 | Asn | AUU: 0 | GUU: 1 | |||||||||
| Lys | CUU: 0 | UUU: 1 | Lys | CUU: 0 | UUU: 1 | |||||||||
| Asp | AUC: 0 | GUC: 1 | Asp | AUC: 0 | GUC: 1 | |||||||||
| Glu | CUC: 0 | UUC: 2 | Glu | CUC: 0 | UUC: 2 | |||||||||
| His | AUG: 0 | GUG: 1 | His | AUG: 0 | GUG: 1 | |||||||||
| Gln | CUG: 0 | UUG: 1 | Gln | CUG: 0 | UUG: 2 | |||||||||
| Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | |||||
| Met | CAU: 2 | Met | CAU: 2 | |||||||||||
| Tyr | AUA: 0 | GUA: 1 | Tyr | AUA: 0 | GUA: 1 | |||||||||
| Cys | ACA: 0 | GCA: 1 | Cys | ACA: 0 | GCA: 1 | |||||||||
| Trp | CCA: 1 | Trp | CCA: 1 | |||||||||||
| Supressor | CUA: 0 | UUA: 0 | UCA: 0 | Supressor | CUA: 0 | UUA: 0 | UCA: 0 | |||||||
| Sec | UCA: 0 | Sec | UCA: 0 | |||||||||||
| D. spinulosum (29) | C. lanceolata (28) | |||||||||||||
| Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | |||||
| Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 0 | Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 0 | |||||
| Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | |||||
| Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | |||||
| Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | |||||
| Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | |
| Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | Arg | ACG: 1 | GCG: 0 | CCG: 0 | UCG: 0 | CCU: 0 | UCU: 1 | |
| Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | |
| Phe | AAA: 0 | GAA: 1 | Phe | AAA: 0 | GAA: 1 | |||||||||
| Asn | AUU: 0 | GUU: 1 | Asn | AUU: 0 | GUU: 1 | |||||||||
| Lys | CUU: 0 | UUU: 1 | Lys | CUU: 1 | UUU: 1 | |||||||||
| Asp | AUC: 0 | GUC: 1 | Asp | AUC: 0 | GUC: 1 | |||||||||
| Glu | CUC: 0 | UUC: 2 | Glu | CUC: 0 | UUC: 2 | |||||||||
| His | AUG: 0 | GUG: 2 | His | AUG: 0 | GUG: 1 | |||||||||
| Gln | CUG: 0 | UUG: 1 | Gln | CUG: 0 | UUG: 2 | |||||||||
| Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | |||||
| Met | CAU: 2 | Met | CAU: 2 | |||||||||||
| Tyr | AUA: 0 | GUA: 1 | Tyr | AUA: 0 | GUA: 1 | |||||||||
| Cys | ACA: 0 | GCA: 1 | Cys | ACA: 0 | GCA: 1 | |||||||||
| Trp | CCA: 1 | Trp | CCA: 1 | |||||||||||
| Supressor | CUA: 0 | UUA: 0 | UCA: 0 | Supressor | CUA: 0 | UUA: 0 | UCA: 0 | |||||||
| Sec | UCA: 0 | Sec | UCA: 0 | |||||||||||
| G. biloba (30) | T. mairei (26) | |||||||||||||
| Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 0 | |||||
| Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 1 | Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 0 | |||||
| Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | |||||
| Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | |||||
| Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 0 | Val | AAC: 0 | GAC: 0 | CAC: 0 | UAC: 0 | |||||
| Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | Ser | AGA: 0 | GGA: 0 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | |
| Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | Arg | ACG: 1 | GCG: 0 | CCG: 0 | UCG: 0 | CCU: 0 | UCU: 1 | |
| Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 2 | UAA: 0 | Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | |
| Phe | AAA: 0 | GAA: 1 | Phe | AAA: 0 | GAA: 1 | |||||||||
| Asn | AUU: 0 | GUU: 1 | Asn | AUU: 0 | GUU: 1 | |||||||||
| Lys | CUU: 0 | UUU: 1 | Lys | CUU: 0 | UUU: 1 | |||||||||
| Asp | AUC: 0 | GUC: 1 | Asp | AUC: 0 | GUC: 1 | |||||||||
| Glu | CUC: 0 | UUC: 1 | Glu | CUC: 0 | UUC: 1 | |||||||||
| His | AUG: 0 | GUG: 2 | His | AUG: 0 | GUG: 1 | |||||||||
| Gln | CUG: 0 | UUG: 1 | Gln | CUG: 0 | UUG: 1 | |||||||||
| Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | Ile | AAU: 1 | GAU: 0 | CAU: 2 | UAU: 1 | |||||
| Met | CAU: 2 | Met | CAU: 2 | |||||||||||
| Tyr | AUA: 1 | GUA: 1 | Tyr | AUA: 0 | GUA: 1 | |||||||||
| Cys | ACA: 1 | GCA: 1 | Cys | ACA: 0 | GCA: 1 | |||||||||
| Trp | CCA: 1 | Trp | CCA: 1 | |||||||||||
| Supressor | CUA: 0 | UUA: 0 | UCA: 0 | Supressor | CUA: 0 | UUA: 0 | UCA: 0 | |||||||
| Sec | UCA: 0 | Sec | UCA: 0 | |||||||||||
| C. deodara (29) | W. mirabilis (29) | |||||||||||||
| Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | |||||
| Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 1 | Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 1 | |||||
| Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | |||||
| Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | |||||
| Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 0 | Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | |||||
| Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | |
| Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | Arg | ACG: 1 | GCG: 0 | CCG: 2 | UCG: 0 | CCU: 0 | UCU: 1 | |
| Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | |
| Phe | AAA: 0 | GAA: 1 | Phe | AAA: 0 | GAA: 1 | |||||||||
| Asn | AUU: 0 | GUU: 1 | Asn | AUU: 0 | GUU: 1 | |||||||||
| Lys | CUU: 0 | UUU: 1 | Lys | CUU: 0 | UUU: 1 | |||||||||
| Asp | AUC: 0 | GUC: 1 | Asp | AUC: 0 | GUC: 1 | |||||||||
| Glu | CUC: 0 | UUC: 2 | Glu | CUC: 0 | UUC: 2 | |||||||||
| His | AUG: 0 | GUG: 1 | His | AUG: 0 | GUG: 1 | |||||||||
| Gln | CUG: 0 | UUG: 1 | Gln | CUG: 0 | UUG: 1 | |||||||||
| Ile | AAU: 0 | GAU: 04 | CAU: 1 | UAU: 0 | Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | |||||
| Met | CAU: 2 | Met | CAU: 2 | |||||||||||
| Tyr | AUA: 0 | GUA: 1 | Tyr | AUA: 0 | GUA: 1 | |||||||||
| Cys | ACA: 0 | GCA: 1 | Cys | ACA: 0 | GCA: 1 | |||||||||
| Trp | CCA: 1 | Trp | CCA: 1 | |||||||||||
| Supressor | CUA: 0 | UUA: 0 | UCA: 0 | Supressor | CUA: 0 | UUA: 0 | UCA: 0 | |||||||
| Sec | UCA: 0 | Sec | UCA: 0 | |||||||||||
| W. nobilis (30) | G. gnemon (30) | |||||||||||||
| Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | |||||
| Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 1 | Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 1 | |||||
| Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | |||||
| Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | |||||
| Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 0 | Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | |||||
| Ser | AGA: 0 | GGA: 1 | CGA: 1 | UGA: 1 | ACU: 0 | GCU: 1 | Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | |
| Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | |
| Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | |
| Phe | AAA: 0 | GAA: 1 | Phe | AAA: 0 | GAA: 1 | |||||||||
| Asn | AUU: 0 | GUU: 1 | Asn | AUU: 0 | GUU: 1 | |||||||||
| Lys | CUU: 0 | UUU: 1 | Lys | CUU: 0 | UUU: 1 | |||||||||
| Asp | AUC: 0 | GUC: 1 | Asp | AUC: 0 | GUC: 1 | |||||||||
| Glu | CUC: 0 | UUC: 2 | Glu | CUC: 0 | UUC: 2 | |||||||||
| His | AUG: 0 | GUG: 1 | His | AUG: 0 | GUG: 1 | |||||||||
| Gln | CUG: 0 | UUG: 1 | Gln | CUG: 0 | UUG: 1 | |||||||||
| Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | |||||
| Met | CAU: 2 | Met | CAU: 2 | |||||||||||
| Tyr | AUA: 0 | GUA: 1 | Tyr | AUA: 0 | GUA: 1 | |||||||||
| Cys | ACA: 0 | GCA: 1 | Cys | ACA: 0 | GCA: 1 | |||||||||
| Trp | CCA: 1 | Trp | CCA: 1 | |||||||||||
| Supressor | CUA: 0 | UUA: 0 | UCA: 0 | Supressor | CUA: 0 | UUA: 0 | UCA: 0 | |||||||
| Sec | UCA: 0 | Sec | UCA: 0 | |||||||||||
| R. piresii (29) | E. equisetina (25) | |||||||||||||
| Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 0 | Ala | AGC: 0 | GGC: 0 | CGC: 0 | UGC: 1 | |||||
| Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 1 | Gly | ACC: 0 | GCC: 1 | CCC: 0 | UCC: 0 | |||||
| Pro | AGG: 0 | GGG: 1 | CGG: 0 | UGG: 1 | Pro | AGG: 0 | GGG: 0 | CGG: 0 | UGG: 1 | |||||
| Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 1 | Thr | AGU: 0 | GGU: 1 | CGU: 0 | UGU: 0 | |||||
| Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 1 | Val | AAC: 0 | GAC: 1 | CAC: 0 | UAC: 0 | |||||
| Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | Ser | AGA: 0 | GGA: 1 | CGA: 0 | UGA: 1 | ACU: 0 | GCU: 1 | |
| Arg | ACG: 1 | GCG: 0 | CCG:1 | UCG: 0 | CCU: 0 | UCU: 1 | Arg | ACG: 1 | GCG: 0 | CCG:0 | UCG: 0 | CCU: 0 | UCU: 1 | |
| Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | Leu | AAG: 0 | GAG: 0 | CAG: 0 | UAG: 1 | CAA: 1 | UAA: 1 | |
| Phe | AAA: 0 | GAA: 1 | Phe | AAA: 0 | GAA: 1 | |||||||||
| Asn | AUU: 0 | GUU: 1 | Asn | AUU: 0 | GUU: 1 | |||||||||
| Lys | CUU: 0 | UUU: 1 | Lys | CUU: 0 | UUU: 1 | |||||||||
| Asp | AUC: 0 | GUC: 2 | Asp | AUC: 0 | GUC: 1 | |||||||||
| Glu | CUC: 0 | UUC: 2 | Glu | CUC: 0 | UUC: 2 | |||||||||
| His | AUG: 0 | GUG: 1 | His | AUG: 0 | GUG: 1 | |||||||||
| Gln | CUG: 0 | UUG: 1 | Gln | CUG: 0 | UUG: 1 | |||||||||
| Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | Ile | AAU: 0 | GAU: 0 | CAU: 1 | UAU: 0 | |||||
| Met | CAU: 2 | Met | CAU: 2 | |||||||||||
| Tyr | AUA: 0 | GUA: 1 | Tyr | AUA: 0 | GUA: 1 | |||||||||
| Cys | ACA: 0 | GCA: 1 | Cys | ACA: 0 | GCA: 1 | |||||||||
| Trp | CCA: 1 | Trp | CCA: 2 | |||||||||||
| Supressor | CUA: 0 | UUA: 0 | UCA: 0 | Supressor | CUA: 0 | UUA: 0 | UCA: 0 | |||||||
| Sec | UCA: 0 | Sec | UCA: 0 | |||||||||||