HNSCC |
Head and neck squamous cell carcinoma |
AUC |
Area under the receiver operating curve |
HPV |
Human papillomavirus |
AN |
Adjacent normal |
ORF |
Open reading frame |
OUT |
Operational taxonomic unit |
ASV |
amplicon sequence variant |
PERMANOVA |
Permutational multivariate analysis of variance |
MWU |
Mann–Whitney Wilcoxon rank sum test |
WSR |
Wilcoxon signed rank test |
KW |
Kruskal–Wallis test |
Tukey HSD |
Tukey’s honest significant difference |
ROC |
Receiver operating characteristic |
KEGG |
Kyoto Encyclopedia of Genes and Genomes |
KO |
Kyoto Encyclopedia of Genes and Genomes Orthology |
FFPE |
Formalin-fixed paraffin-embedded |
DMRs |
Differentially methylated regions |
TCGA |
The cancer genome atlas |
HR |
High risk |
PCoA |
Principal coordinate analysis |
LefSe |
Linear discriminant analysis effect size |
LDA |
Linear discriminant analysis |
PICRUSt2 |
Phylogenetic Investigation of Communities by Reconstruction of Unobserved States 2 |
DSS |
Disease specific survival |
DFS |
Disease free survival |
ISH |
In situ hybridization |
Glm nb |
generalized linear regression model test |
TSG |
tumor suppressor gene |
LXN |
Latexin |
qPCR |
Quantitative PCR |
F-Low |
Fusobacterium-low |
F-High |
Fusobacterium-high |