Table 1.

Candidate SNPs identified from the exploratory GWAS. A1 indicates the minor allele (i.e., least frequently observed based on the whole sample); F_A and F_U indicate the frequency of the minor allele in the affected and unaffected cats, respectively. The p value is shown calculated by Fisher’s Exact test and Bonferroni corrected by PLINK. No odds ratio could be calculated for SNP2 because the associated allele was not found in unaffected cats. SNPs were named in the Illumina array only as custom numbers; for convenience, they are named here as SNPs 1 to 6.

SNP	Illumina No.	A1	F_A	F_U	p	Odds Ratio
SNP1	10566	G	0.75	0.15	0.00014	17
SNP2	10762	G	0.5	0	0.00026	NA
SNP3	30747	G	0.1	0.65	0.00033	0.059
SNP4	36147	G	0.8	0.2	0.00015	16
SNP5	36165	A	0.1	0.65	0.00033	0.059
SNP6	36166	A	0.1	0.65	0.00033	0.059