Table 3.
DEGs 1 (FDR 2 < 0.05, FC 3 > 2) of ZBED6 4-SKO 5 pig liver using RNA-seq.
| Gene ID | Gene Name | MeanTPM 6 (SKO) | MeanTPM 6 (WT 7) | log2 (FC) | p Value | FDR Value | Notes |
|---|---|---|---|---|---|---|---|
| ENSSSCG00000049098 | - | 0.00010000 | 1.23588067 | −13.59325183 | 1.65 × 10−15 | 3.45 × 10−11 | LncRNA |
| ENSSSCG00000044627 | - | 2.20908400 | 0.00010000 | 14.43116066 | 6.46 × 10−14 | 6.76 × 10−10 | LncRNA |
| ENSSSCG00000046118 | - | 0.13868175 | 1.42510900 | −3.361222417 | 3.35 × 10−12 | 2.34 × 10−8 | Pseudogene |
| ENSSSCG00000003986 | ZFP211L | 1.90845525 | 0.01244633 | 7.260540758 | 2.74 × 10−9 | 1.43 × 10−5 | Protein coding |
| ENSSSCG00000011532 | SUMF1 | 18.72840650 | 2.12422033 | 3.140222832 | 3.39 × 10−8 | 1.42 × 10−4 | Protein coding |
| ENSSSCG00000051359 | NIPSNAP1 | 0.00010000 | 0.33187667 | −11.69643149 | 1.13 × 10−7 | 3.96 × 10−4 | Protein coding |
| ENSSSCG00000011114 | SEC61A2 | 1.51700350 | 10.70244267 | −2.818643788 | 2.87 × 10−7 | 8.57 × 10−4 | Protein coding |
| ENSSSCG00000006862 | VCAM1 | 7.08961450 | 24.63916067 | −1.797174024 | 1.70 × 10−6 | 4.43 × 10−3 | Protein coding |
| ENSSSCG00000023121 | ABCA7 | 1.06993575 | 0.02500733 | 5.419029131 | 3.01 × 10−6 | 6.99 × 10−3 | Protein coding |
| ENSSSCG00000007850 | ANKS4B | 9.24855825 | 39.92152333 | −2.109866385 | 3.43 × 10−6 | 7.18 × 10−3 | Protein coding |
| ENSSSCG00000033190 | AQP1 | 0.99121175 | 4.57049600 | −2.205085543 | 5.73 × 10−6 | 1.09 × 10−2 | Protein coding |
| ENSSSCG00000000732 | CRACR2A | 1.02969150 | 0.14599400 | 2.81823118 | 7.75 × 10−6 | 1.35 × 10−2 | Protein coding |
| ENSSSCG00000011120 | USP6NL | 3.51777325 | 1.07724900 | 1.707310733 | 1.05 × 10−5 | 1.70 × 10−2 | Protein coding |
| ENSSSCG00000037808 | novel gene | 417.64328400 | 64.70200867 | 2.690388832 | 1.41 × 10−5 | 2.11 × 10−2 | Protein coding |
| ENSSSCG00000035850 | CATSPERE | 0.07047350 | 0.75291833 | −3.417340618 | 2.29 × 10−5 | 2.81 × 10−2 | Protein coding |
| ENSSSCG00000040016 | EMR4 | 12.88731075 | 2.17047567 | 2.569868088 | 2.26 × 10−5 | 2.81 × 10−2 | Protein coding |
| ENSSSCG00000007427 | ZSWIM3 | 1.82821425 | 0.46398233 | 1.978293372 | 3.43 × 10−5 | 3.98 × 10−2 | Protein coding |
Notes: 1 DEGs: different expression genes; 2 FDR: false discovery rates; 3 FC: fold change; 4 ZBED6: zinc finger BED-type containing 6; 5 SKO: single allelic knockout; 6 TPM: transcripts per million reads; 7 WT: wild type.