. 2020 Nov 24;11(6):e02641-20. doi: 10.1128/mBio.02641-20

TABLE 1.

Summary of metagenome-assembled genomes (MAGs) reconstructed from the metagenomes of the “Little Firn” glacier (LF) and nearby exposed soil (ES) that contain genes related to bacteriochlorophyll- or rhodopsin-based phototrophy^a

MAG	Lineage		Size (Mbp)	No. of contigs	Completeness (%)	Contamination (%)	Phototrophy
MAG	(Sub)phylum	Genus	Size (Mbp)	No. of contigs	Completeness (%)	Contamination (%)	pufM	PR	ActR	BR	XR	HeR
LF-bin-79	Alphaproteobacteria	Rubritepida	3.78	585	95.51	3.73	●				●
LF-bin-280	Alphaproteobacteria	Tardiphaga	5.55	642	91.96	7.88	●				●
LF-bin-283	Alphaproteobacteria	Tardiphaga	4.50	785	92.36	8.02	●
LF-bin-46	Betaproteobacteria	Ramlibacter	4.05	336	95.48	4.74	●		●
LF-bin-10	Gammaproteobacteria	n.d.	2.55	141	92.16	2.56		●
LF-bin-172	Gammaproteobacteria	n.d.	3.55	274	91.13	0.99					●
LF-bin-25	Actinobacteria	Aeromicrobium	4.22	400	94.99	5.85					●
LF-bin-295	Actinobacteria	Aeromicrobium	5.01	519	100	7.52					●	●
LF-bin-300	Actinobacteria	n.d.	3.77	278	95.97	2.05					●	●
LF-bin-354	Actinobacteria	n.d.	2.42	100	96.17	3.64					●
LF-bin-355	Bacteroidetes	Ferruginibacter	3.68	394	91.9	1.07				●
LF-bin-258	Bacteroidetes	Flavobacterium	2.95	172	94.92	5.24				●
LF-bin-351	Bacteroidetes	Flavobacterium	3.28	269	94.16	3.86				●
LF-bin-500	Bacteroidetes	n.d.	2.94	211	95.95	0.95				●
LF-bin-319	Bacteroidetes	Pedobacter	3.00	296	90.03	3.99				●
LF-bin-240	Bacteroidetes	Pseudopedobacter	3.34	191	91.39	6.54				●
LF-bin-127	Oligoflexia	Bdellovibrio	2.86	186	91.39	0.9		●
LF-bin-439	Oligoflexia	Bdellovibrio	3.27	192	95.21	4.68					●
LF-bin-57	Oligoflexia	Bdellovibrio	2.76	42	90.32	0.9					●
LF-bin-124	Oligoflexia	n.d.	2.33	259	90.69	4.95					●
LF-bin-178	Oligoflexia	n.d.	4.04	82	91.89	1.79					●
LF-bin-339	Gemmatimonadetes	n.d.	3.78	254	90.61	3.3	●				●
ES-bin-98	Alphaproteobacteria	n.d.	3.50	252	95.22	2.55	●				●
ES-bin-147	Armatimonadetes	n.d.	4.22	495	92.2	2.04					●
ES-bin-166	Bacteroidetes	n.d.	4.04	68	94.46	0.71					●
ES-bin-26	Bacteroidetes	n.d.	5.43	717	90.76	1.36				●
ES-bin-22	Cyanobacteria	Leptolyngbya	5.12	603	91.39	3.97					●
ES-bin-313	Cyanobacteria	n.d.	4.25	198	95.73	4.56				●

Only MAGs that are >90% complete with <10% contamination are shown. See Table S2 for the full list of MAGs (>50% complete and <10% contamination). PR, proteorhodopsin; XR, xanthorhodopsin; ActR, actinorhodopsin; BR, bacteriorhodopsin; HeR, heliorhodopsin (a recently discovered new type of rhodopsin [26]); n.d., not determined. The classification of rhodopsin genes was based on phylogenetic analysis using a comprehensive collection of rhodopsin genes as the reference data set (see Text S1).