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. 2020 Nov 18;3(1):142–158. doi: 10.1089/nsm.2019.0009

Table 7.

Cytoscape Modules of Target Proteins with Linkers using ReactomeFI App

Rank Modules of target proteins with linkers Top pathway for each module
1 ACTB, CDC42, ELK4, FASN, FYN, IGF1R, IQGAP1, PTPRJ, SETD7, ZNF703 Adherens junction (KEGG hsa 04520)
(Linkers: CCT8, CSNK2A2, CTNNB1, MAPK3, STAT3)
2 BAG6, DYRK1A, EWSR1, H3F3B, KMT2D, SCD, SIN3A Transcriptional misregulation in cancer (KEGG hsa05202)
(Linkers: EP300, HIST1H4A, RXRA)
3 DDX5, HNRNPC, NCL, PCBP2, PRPF8, SCARB2, TCF3 Processing of capped intron-containing pre-mRNA (Reactome R-HSA-75067)
(Linker: HSPA8)
4 ASH1L, DCP2, DYNC1H1, SPOPL, TGFBR1 Beta5 beta6 beta7 and beta8 integrin cell surface interactions (NCI PID)
(Linkers: SUFU, UBC)
5 CCND2, CCNE2, MCM7, RB1 Cell cycle (KEGG hsa04110)