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. 2020 Nov 16;11:565626. doi: 10.3389/fgene.2020.565626

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Copyright © 2020 Chida, Ravi, Jayaprasad, Paul, Saha, Suresh, Whadgar, Kumar, Rao K, Ghosh, Choudhary, Subramani and Srinivasan.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Homology-based scaffolding. (A) Scaffolds after homology-based scaffolding covering the range of physical markers for only 2R. (B) Karyogram of IndV4. (C) Dot plot of UCI assembly against all assemblies of the STE2 strain reported here including IndV3s (top), IndV4uci/IndV4ste2 (middle, only 3R is different), and IndV4qm (bottom). Inset shows contact maps of the 2R arm with HiC reads from the STE2 strain against the respective STE2 assemblies. The blue curved arrow shows the manually moved block. The blue strip, green, and peach circles highlight potential inversions against UCI assembly in respective STE2 assemblies.