Table 3. Summary of the real and simulated datasets used in comparing methods.

Reference Panel	Length (Mb)	Number of Reference Samples	Number of Reference Markers	Target Marker Description	Number of Target Markers
1000 Genomes chr 20	62.9	2,452	1,569,377	Illumina Omni2.5	53,183
1000 Genomes chr 20	62.9	2,452	1,569,377	Infinium OmniExpress-24	17,806
1000 Genomes chr 10	135.5	2,452	3,431,035	Illumina Omni2.5	111,570
1000 Genomes chr 10	135.5	2,452	3,431,035	Infinium OmniExpress-24	37,798
HRC chr 20	62.9	31,470	884,983	Illumina Omni2.5	53,600
HRC chr 20	62.9	31,470	884,983	Infinium OmniExpress-24	18,002
HRC chr 10	135.5	31,470	1,927,503	Illumina Omni2.5	111,657
HRC chr 10	135.5	31,470	1,927,503	Infinium OmniExpress-24	38,206
Panel A Sim10K	10.0	10,000	223,116	>5% MAF	3,333
Panel A Sim100K	10.0	100,000	747,162	>5% MAF	3,333
Panel A Sim1M	10.0	1,000,000	2,274,530	>5% MAF	3,333
Panel B Sim10K	10.0	10,000	223,116	>0.05% MAF in Panel B Sim1M	33,333
Panel B Sim100K	10.0	100,000	223,116	>0.05% MAF in Panel B Sim1M	33,333
Panel B Sim1M	10.0	1,000,000	223,116	>0.05% MAF in Panel B Sim1M	33,333