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. 2020 Nov 10;9:e61834. doi: 10.7554/eLife.61834

Table 1. Currently available file formats in SpikeInterface and if they are writable.

*The Phy writing method is implemented in spiketoolkit as the export_to_phy function (all other writing methods are implemented in spikeextractors).

Raw formats Writable Reference Sorted formats Writable Reference
Klusta Yes Rossant et al., 2016 Klusta Yes Rossant et al., 2016
Mountainsort Yes Jun et al., 2017a Mountainsort Yes Jun et al., 2017a
Phy* Yes Rossant and Harris, 2013 Phy* Yes Rossant and Harris, 2013
Kilosort/Kilosort2 No Pachitariu et al., 2016; Rossant et al., 2014 Kilosort/Kilosort2 No Pachitariu et al., 2016; Rossant et al., 2014
SpyKING Circus No Yger et al., 2018 SpyKING Circus Yes Yger et al., 2018
Exdir Yes Dragly et al., 2018 Exdir Yes Dragly et al., 2018
MEArec Yes Buccino and Einevoll, 2020 MEArec Yes Buccino and Einevoll, 2020
Open Ephys No Siegle et al., 2017 Open Ephys No Siegle et al., 2017
Neurodata Without Borders Yes Teeters et al., 2015 Neurodata Without Borders Yes Teeters et al., 2015
NIX Yes NIX, 2015 NIX Yes NIX, 2015
Plexon No Plexon, 2020 Plexon No Plexon, 2020
Neuralynx No Neuralynx, 2020 Neuralynx No Neuralynx, 2020
SHYBRID Yes Wouters et al., 2020 SHYBRID Yes Wouters et al., 2020
Neuroscope Yes Hazan et al., 2006 Neuroscope Yes Hazan et al., 2006
SpikeGLX No Karsh, 2016 HerdingSpikes2 Yes Hilgen et al., 2017
Intan No Intan, 2010 JRCLUST No Jun et al., 2017b
MCS H5 No MCS, 2020 Wave clus No Chaure et al., 2018
Biocam HDF5 Yes Biocam, 2018 Tridesclous No Garcia and Pouzat, 2015
MEA1k Yes MEA1k, 2020 NPZ (numpy zip) Yes N/A
MaxOne No MaxWell, 2020
Binary Yes N/A