Table 4.
Comparison of the snake gourd genome assembly and other Cucurbitaceae genome assemblies
| Genome size | Contig N50 | Scaffold N50 | Complete BUSCOs | Repetitive sequences | LTRs | Protein-coding genes | |
|---|---|---|---|---|---|---|---|
| Snake gourd | 919.76 Mb | 20.11 Mb | 82.12 Mb | 95.38% | 80.03% | 66.74% | 22,874 |
| Watermelon23 | 353.5 Mb | 26.38 kb | 2.38 Mb | – | 45.20% | – | 23,440 |
| Watermelon24 | 365.1 Mb | 2.3 Mb | 21.9 Mb | – | 55.55% | – | 22,596 |
| Melon19 | 386 Mb | 2.86 Mb | – | 92.78% | 49.80% | 30.16% | 22,924 |
| Melon18 | 375 Mb | 18.2 kb | 4.68 Mb | – | 19.70% | 12.80% | 27,427 |
| Sponge gourd29 | 669 Mb | 5 Mb | 53 Mb | 91.60% | 62.18% | 58.32% | 31,661 |
| Bottle gourd22 | 313.4 Mb | 28.3 kb | 8.7 Mb | 95.40% | 46.90% | 39.80% | 22,472 |
| Silver-seed gourd27 | 228.8 Mb | 463.4 kb | 620.88 kb | 93.20% | 34.10% | 49.09% | 28,298 |
| Cucumber17 | 226.2 Mb | 8.9 Mb | 11.5 Mb | – | 36.43% | – | 24,317 |
| Zucchini21 | 263 Mb | 110 kb | 1.8 Mb | 92.10% | 37.80% | 50.70% | 27,870 |
| Bitter gourd30 | 285.5 Mb | – | 1.1 Mb | – | 15.30% | 9.90% | 45,859 |
| C. maxima26 | 271.4 Mb | 40.7 kb | 3.7 Mb | 95.50% | 40.30% | 69.90% | 32,076 |
| C. moschata26 | 269.9 Mb | 40.5 kb | 4.0 Mb | 95.90% | 40.60% | 62.90% | 32,205 |
| Wax gourd28 | 913 Mb | 68.5 kb | 3.4 Mb | 91.00% | 75.50% | 57.70% | 27,467 |