KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit anti-APP [Y188] | abcam | AB_2289606 |
Rabbit anti-APP-CTF | Sigma-Aldrich | AB_258409 |
Rabbit anti-APLP1 | D. Walsh's Lab | N/A |
Rabbit anti-APLP1-C-term [643–653] | Millipore | AB_565288 |
Rabbit anti-APLP2 | D. Walsh's Lab | N/A |
Rabbit anti-APLP2-C-term [752–763] | Millipore | AB_211446 |
Mouse anti-NeuN | Millipore | AB_2298772 |
Mouse anti-GAD67 | Millipore | AB_2278725 |
Rabbit anti-Cleaved Caspase3 (Asp175) | Cell signaling | AB_2341188 |
Mouse anti-MAP2 | abcam | AB_776174 |
Rabbit anti-PSD95 | Cell signaling | AB_1264242 |
Rabbit anti-Synaptophysin | Cell signaling | AB_10698743 |
Rabbit anti-SNAP25 | abcam | AB_10888111 |
Mouse anti-GFAP | Sigma-Aldrich | AB_1840893 |
Mouse anti-β-actin | Sigma-Aldrich | AB_476692 |
Mouse anti-β-actin | Cell signaling | AB_2242334 |
Rabbit anti-β-actin | Cell signaling | AB_330288 |
Goat Biotynylated anti-Rabbit IgG (H&L) | Vector Laboratories | AB_2313606 |
Goat Biotynylated anti-Mouse IgG (H&L) | Vector Laboratories | AB_2336171 |
Goat anti-Rabbit IRdye680 Secondary Antibody | LI-COR Biosciences | AB_10956166 |
Goat anti-Mouse IRdye680 Secondary Antibody | LI-COR Biosciences | AB_2651128 |
Goat anti-Rabbit IRdye800 Secondary Antibody | LI-COR Biosciences | AB_2651127 |
Goat anti-Mouse IRdye800 Secondary Antibody | LI-COR Biosciences | AB_2687825 |
Alexa Fluor® 488 Goat Anti-Rabbit IgG (H+L) | Thermo Fisher Scientific | AB_2576217 |
Alexa Fluor® 555 Goat Anti-Mouse IgG (H+L) | Thermo Fisher Scientific | AB_141780 |
Bacterial and Virus Strains | ||
Biological Samples | ||
Chemicals, Peptides, and Recombinant Proteins | ||
TRIzol | Sigma-Aldrich | Cat # T9424 |
Vectastain Elite ABC reagent | Vector laboratories | AB_2336827 |
RIPA buffer | Thermo Fisher Scientific | Cat # 89900 |
Protease Inhibitor Cocktail | Sigma-Aldrich | Cat # P8340 |
Phosphatase Inhibitor Cocktail | Sigma-Aldrich | Cat # P2850 |
Procaine hydrochlorid | Sigma-Aldrich | Cat # P9879 |
Heparin | Sigma-Aldrich | Cat # H4784 |
Normal Goat Serum Blocking Solution | Vector laboratories | Cat # S-1000 |
Formaldehyde/Glutaraldehyde | Electron Microscopy Science | Cat # 15949 |
Nitrocellulose Membrane | Thermo Fisher Scientific | Cat # 88018 |
DAB Peroxidase Substrate Kit | Vector laboratories | AB_2336827 |
VECTASHIELD Mounting Medium | Vector laboratories | Cat # H-1000 |
In Situ Cell Death Detection Kit | Roche | Cat # 11684795910 |
Cresyl violate (acetate) | Sigma-Aldrich | Cat # C5042 |
Sodium chloride | Sigma-Aldrich | Cat # S5886 |
Potassium chloride | Sigma-Aldrich | Cat # P9541 |
Sucrose | Sigma-Aldrich | Cat # S7903 |
D-(+)-Glucose | Sigma-Aldrich | Cat # G5767 |
Sodium phosphate monobasic | Sigma-Aldrich | Cat # S5011 |
Sodium bicarbonate | Sigma-Aldrich | Cat # S5761 |
Sodium pyruvate | Sigma-Aldrich | Cat # P5280 |
(+)-Sodium L-ascorbate | Sigma-Aldrich | Cat # A4034 |
Calcium chloride dihydrate | Sigma-Aldrich | Cat # 223506 |
Magnesium chloride hexahydrate | Sigma-Aldrich | Cat # M9272 |
HEPES | Sigma-Aldrich | Cat # H3375 |
EGTA | Boston Bio Products | Cat # BM-151 |
Adenosine 5′-triphosphate magnesium salt | Sigma-Aldrich | Cat # A9187 |
Guanosine-13C10 5′-triphosphate sodium salt | Sigma-Aldrich | Cat # G8877 |
Potassium D-gluconate | Sigma-Aldrich | Cat # G4500 |
Phosphocreatine disodium salt hydrate | Sigma-Aldrich | Cat # P7936 |
Picrotoxin | Tocris | Cat # 1128 |
APV | Tocris | Cat # 0106 |
NBQX disodium salt | Tocris | Cat # 1044 |
Tetrodotoxin | Tocris | Cat # 1069 |
XE991 dihydrochloride | Tocris | Cat # 2000 |
Critical Commercial Assays | ||
Deposited Data | ||
Raw and analyzed data | This paper; and Mendeley Data | http://dx.doi.org/10.17632/vs48zct2xp.1 |
Experimental Models: Cell Lines | ||
Mouse: MKV6.5 ES cell | R. Jaenisch's Lab | N/A |
Experimental Models: Organisms/Strains | ||
Mouse: B6129SF1/J | The Jackson Laboratory | IMSR_JAX:101043 |
Mouse: Camk2a-Cre transgenic | Yu et al., 2001 | N/A |
Mouse: B6.Cg-Tg(ACTFLPe)9205Dym/J | Rodriguez et al., 2000 | IMSR_JAX:005703 |
Mouse: fAPP/fAPP | This paper | N/A |
Mouse: fAPLP1/fAPLP1 | This paper | N/A |
Mouse: fAPLP2/fAPLP2 | This paper | N/A |
Oligonucleotides | ||
See Table S1 for The List of Oligonucleotides | ||
Recombinant DNA | ||
Software and Algorithms | ||
Image-Studio | Li-Cor | SCR_013715 |
Fiji (ImageJ) | NIH | SCR_002285 |
PRISM 8 | GraphPad | SCR_005375 |
Bioquant Life Science | Bioquant Life Science | SCR_016423 |
Accuscan Versamax | AccuScan Instruments | v.1.05 |
HVS Image 2020 Plus tracking system | HVS Image | v.5/2003 |
FV10-ASW | Olympus | SCR_014215 |
Clampfit | Molecular device | v.10.3 |
Igor Pro | Wave-Metrics | SCR_000325 |
Other |