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. Author manuscript; available in PMC: 2021 May 23.
Published in final edited form as: Nat Methods. 2020 Nov 23;17(12):1191–1199. doi: 10.1038/s41592-020-01000-7

Extended Data Fig. 7. Comparison of protein binding prediction with ChIP-seq.

Extended Data Fig. 7

(a) The fractions of CTCF-bound reads determined by sub-nucleosomal footprints were compared with ChIP-seq coverage enrichments per CTCF binding motif, showing that the ChIP-seq signal tends to increase with CTCF binding fraction, and (b) the distributions of the fractions were stratified by binding motifs with ChIP-seq peaks to those without peaks, showing that sites with ChIP-seq peaks have higher fractions of CTCF binding. Data are presented as median values, interquartile range (IQR), and 1.5X IQR, as well as density distributions.