Table 1.
Summary of the PI464715 genome assembly and annotation.
| Categories | Type | Length (bp) | No. | % of genome |
|---|---|---|---|---|
| Assembly | Contigs | 793,191,298 | 355 | - |
| Contig N50 | 3,857,628 | 65 | - | |
| Contig N90 | 1,207,163 | 205 | - | |
| Longest | 14,548,009 | 1 | - | |
| Noncoding RNAs | miRNA | 117,689 | 1023 | 0.015 |
| snRNA | 269,590 | 2438 | 0.034 | |
| rRNA | 331,884 | 1978 | 0.042 | |
| tRNA | 63,912 | 857 | 0.008 | |
| Transposable elements | DNA | 57,410,696 | - | 7.24 |
| LINE | 34,454,045 | - | 4.34 | |
| SINE | 2,527,147 | - | 0.32 | |
| LTR | 251,835,738 | - | 31.75 | |
| RC | 15,102,186 | - | 1.9 | |
| Satellite | 342,023 | - | 0.043 | |
| Simple_Repeat | 10,038,485 | - | 1.26 | |
| Unknown | 80,412,452 | - | 10.14 | |
| Low_Complexity | 1,803,306 | - | 0.23 | |
| Total | 440,637,371 | - | 55.55 | |
| Gene | Gene loci | - | 47,202 | - |
| Average gene length (bp) | 3151 | - | - | |
| Average CDS length (bp) | 1085 | - | - | |
| Average exon length (bp) | 231 | - | - | |
| Average exons per gene | - | 4.7 | - | |
| Average intron length | 615 | - | - |