Table 2.

Upregulated enriched genes associated to the Gene Ontology biological process category

ID	Description	Fold change	P-value
Protein phosphorylation
LINF_320013700	CYC2-like cyclin—putativea	5.56	3.34E−42
LINF_340027100	Dual specificity protein phosphatase—putative	8.93	4.34E−107
LINF_360054700	Elongation factor-2 kinase-like protein	3.23	2.10E−16
LINF_350046100	Kinetoplastid kinetochore protein 3—putative	2.02	9.69E−13
LINF_250012200	Myosin heavy chain kinase c-like protein	3.37	3.77E−20
LINF_300023300	Phosphatidylinositol kinase—putativea	3.97	4.10E−42
LINF_360034100	Protein kinase—putativea	3.88	5.44E−42
LINF_010011100	Rab-GTPase-TBC domain-containing protein	2.13	1.17E−16
LINF_340047100	Target of rapamycin kinase 3a	2.74	2.33E−21
Microtubule-based movement
LINF_070010300	Dynein heavy chaina	5.90	6.51E−54
LINF_130011900	Kinesin—putativea	5.87	1.11E−70
LINF_330038800	Present in the outer mitochondrial membrane	4.06	1.74E−37
LINF_260024800	Microtubule-associated protein—putative	3.73	1.67E−59
LINF_270017700	Intraflagellar transport protein 88—putative	2.16	2.53E−19
LINF_040010500	Tetratricopeptide repeat	2.14	2.06E−19
LINF_210017400	WD40 repeat-containing protein	2.06	4.35E−21
Biosynthetic process
LINF_350008300	Serine palmitoyltransferase—putative	2.99	2.23E−35
LINF_170011100	Phenazine biosynthesis-like protein	2.15	3.76E−08
Cellular process
LINF_360020600	N-terminal region of chorein	4.95	3.27E−59
LINF_190015000	FYVE zinc finger-containing protein	3.66	2.95E−27
LINF_270009800	Glycosomal transporter (GAT3)—putative	3.39	1.48E−39
LINF_240020050	Multi-drug resistance protein-like	3.27	1.11E−33
LINF_350025400	Ankyrin repeat protein—putative	2.67	1.11E−21
Cellular component organization
LINF_130020500	Phosphoprotein phosphatase—putative	2.28	1.71E−11
Protein ubiquitination
LINF_350059500	SPRY domain; HECT-domain (ubiquitin-transferase)a	9.14	4.18E−81
LINF_360053000	Ubiquitin protein ligase—putativea	7.30	3.59E−111
LINF_220017000	Zinc finger—C3HC4 type (RING finger)	3.77	2.20E−40
LINF_110017600	Protein transport protein SEC31—putative	3.57	6.80E−54
LINF_160017100	WW domain-containing protein	2.63	5.06E−15
LINF_160018000	Cullin family	2.23	1.06E−15
Ribonucleoprotein complex assembly
LINF_170016300	ATP-dependent RNA helicase—putative	2.38	1.49E−26
Stress granule assembly
LINF_180019600	Pumilio protein 2—putative	5.59	6.98E−64
Cellular metabolic process
LINF_270018400	RING-H2 zinc finger	3.33	9.20E−24
LINF_290018600	Heat shock protein 100 kDa	2.86	5.67E−32
Primary metabolic process; cellular macromolecule biosynthetic process; cellular nitrogen compound metabolic process
LINF_300022800	DNAJ domain protein—putative	2.13	9.30E−14
Primary metabolic process; macromolecule metabolic process; nitrogen compound metabolic process
LINF_120008300	Myotubularin-related protein—putative	4.00	4.38E−52
Multi-organism cellular process
LINF_310038500	Acetyl-CoA carboxylase—putative	2.74	5.28E−33
Regulation of membrane lipid distribution; phospholipid translocation
LINF_340032300	Phospholipid-transporting ATPase-like proteina	3.69	2.87E−39
Regulation of membrane lipid distribution
LINF_260032600	ATP-binding cassette protein subfamily B—member 2—putative	2.21	7.28E−13
Quorum sensing involved in interaction with host; multi-organism cellular process; modulation of symbiont involved in interaction with host
LINF_330022900	RNA recognition motif. (a.k.a. RRM–RBD or RNP domain)a	14.4	1.07E−153
LINF_330023000	RNA-binding protein—putative	4.01	1.25E−12

^aGenes with more than one copy in the corresponding GO category. See Additional file 1: Table S1 for complete data