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. 2020 Sep 15;61(12):1658–1674. doi: 10.1194/jlr.RA120000975

TABLE 2.

Assembly and annotation quality report

Statistics Assembly Values Statistics Annotation Values
Number of contigs 22 Number of genes 6,469
Min contig length (bp) 3,969 Number of transcripts 6,674
Max contig length (bp) 2,651,629 Number of transcripts with a BLAST hit 5,678
Median contig length (bp) 1,107,845
Mean contig length (bp) 912,557.909
Std contig length (bp) 982,703.5
Total length (bp) 20,076,274
N50 (bp) 1,858,312
L50 5
Number of Ns per 100 kbp 0
GC content (%) 47.59

The sequencing and assembly of the X. dendrorhous genome was carried out with SMRT sequencing developed by PacBio. The annotation was carried out with BRAKER1. Number of Ns per 100 kbp, average number of uncalled bases (Ns) per 100,000 assembly bases; N50, minimum contig length needed to cover 50% of the assembly size; L50, minimum number of contigs accounting for at least half of the assembly; GC content (%), percentage of G and C nucleotides in the assembly.