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. 2020 Nov 4;29(12):1727–1733. doi: 10.1007/s10068-020-00833-4

Table 1.

Sequence of primers used for qRT-PCR

Target Primer Primer sequence
HuNoV COG1F 5′-CGY TGG ATG CGN TTY CAT GA-3′
COG1R 5′-CTT AGA CGC CAT CAT CAT TYAC-3′
RING1a FAM-AGA TYG CGA TCY CCT GTC CA-BHQ
JJV2F 5′-CAA GAG TCA ATG TTT AGG TGG ATG AG-3′
COG2R 5′-TCG ACG CCA TCT TCA TTC AC-3′
RING2P FAM-TGG GAG GGC GAT CGC AAT CT-BHQ
Rotavirus JVKF 5′-CAG TGG TTG ATG CTC AAG ATG GA-3′
JVKR 5′-TCA TTG TAA TCA TAT TGA ATA CCCA-3′
JVKP FAM-ACA ACT GCA GCT TCA AAA GAA GWGT-MGBNFQ-3
Hepatitis A virus HAV68F 5′-CAG CAC ATC AGA AAG GTG AG-3′
HAV240R 5′-CTC CAG AAT CAT CTC CAAC-3′
HAV150 FAM-CCT GAA CCT GCA GGA ATT AA-MGBNFQ

aGenome location of primers for GI is based on the sequence of Norwalk/68/US [GenBank: M87661] and for GII on the sequence of Lordsdale/93/UK [GenBank: AY032605]; Y ¼ C/T; I ¼ inosin; FAM ¼ fluorescein; BHQ ¼ black hole quencher