Table 1.
Description of polymorphic single nucleotide polymorphic (SNP) loci that showed highly significant deviation from Hardy-Weinberg Equilibrium (HWE), and corresponding sunflower (Helianthus annuus) homologs of noug genes harboring the SNPs.
| Noug Contig | SNP Locus | SNP PINC c | Ref_Alt d,e | Missing Genotype | MAF f | Helianthus annuus Homologue: Accession Number and Aligned Region |
|---|---|---|---|---|---|---|
| CL3143Contig1 | 3143A a | 376 | G_C | GG | 0.131 | 17.8 kDa class I heat shock protein-like_LOC110904834: XM_022150704; 212..484 |
| 3143B a | 388 | C_A | AA | 0.120 | ||
| CCHT13019.b1F16.ab1 | 13,019A a | 30 | C_A | AA | 0.389 | Two-component response regulator-like PRR73_LOC110868813: XM_022118076; 1133..1903 |
| 13,019C b | 372 | T_A | AT | 0.448 | ||
| CCHT3719.b1M18.ab1 | 3719A a | 502 | A_G | AA | 0.239 | TPR2-like protein_LOC110930065: XM_022173292; 2716..3466 |
| CCHT4593.b1B22.ab1 | 4593B a | 274 | A_C | None | 0.389 | Calnexin homolog_LOC110865890: XM_022115225; 1115..1583 |
| CCHT4736.b1P07.ab1 | 4736 a | 498 | G_C | GG | 0.293 | Cytochrome P450 CYP82D47-like_LOC110879526: XM_022127994; 1210..1778 |
| CCHT7954.b1C22.ab1 | 7954A a | 387 | T_C | CC | 0.371 | Uncharacterized protein_LOC110878690: XM_022127042; 145..855 |
| CCHT8585.b1B11.ab1 | 8585 a | 280 | C_T | CC | 0.149 | Uncharacterized protein_ LOC110927216: XM_022170855; 1193..1751 |
| CCHT10160.b1P19.ab1 | 10,160 a | 328 | G_C | GG | 0.441 | UDP-arabinopyranose mutase 1-like_ LOC110915474: XM_022160180; 62..679 |
| CCHT13180.b1H07.ab1 | 13,180 a | 460 | G_A | None | 0.432 | 40S ribosomal protein S13_LOC110937753: XM_022180210; 4..544 |
| CCHT17789.b1J07.ab1 | 17,789 a | 698 | C_A | CC | 0.245 | Uncharacterized 38.1 kDa protein-like_LOC110867109: XM_022116245; 208..521 |
| CCHT20996.b1G18.ab1 | 20,996B a | 636 | C_T | CC | 0.470 | Heat shock 70 kDa protein 14 like_LOC110894223: XM_022141417, 93..831 |
| CCHT17807.b1N11.ab1 | 17,807 b | 350 | T_G | GT | 0.250 | Nucleobase-ascorbate transporter 6-like_LOC110941756: XM_022183418; 123..833 |
| CCHT17571.b1F02.ab1 | 17,571 b | 408 | T_A | AT | 0.470 | Probable ADP-ribosylation factor GTPase-activating protein AGD14_LOC110886873: XM_022134739; 92..748 |
| CCHT4779.b1F19.ab1 | 4779 b | 255 | A_C | AC | 0.185 | Probable E3 ubiquitin-protein ligase ARI1_LOC110929292: XM_022172423; 1130..1867 |
a = heterozygote excess; b = heterozygote deficit. c SNP PINC = SNP position in noug contig. d Ref_Alt = Reference allele_Alternate allele; e All SNPs resulted in synonymous amino acid substitution except SNP at locus 3143A that led to the non-synonymous substitution of Serine vs. Arginine, at position 99 of the amino acid sequence of the 17.8 kDa class I heat shock protein-like protein; f MAF = minor allele frequency.