Skip to main content
. 2020 Dec 2;15(12):e0242225. doi: 10.1371/journal.pone.0242225

Table 1. The mean and standard deviation (in parentheses) of the number of landscape changes on the given tree under the stochastic model with the Poisson parameter λ.

Tree “Simple” Saccharomyces mtDNA Simulated birth-death Metazoan mtDNA
#leaves: 4 100 100 3558
sum lengths: 8 0.1585 5622.5 95.0
expected observed expected observed expected observed expected observed
λ = 0.1 0.8 0.8 (0.920) 0.01585 0.0183 (0.135) 5562.25 562.6 (24.0) 9.5 9.69 (3.61)
λ = 1 8 7.909 (2.83) 0.1585 0.152 (0.404) 5622.5 5623.956 (78.28) 95 95.14 (9.69)
λ = 10 80 79.96 (8.891) 1.585 1.583 (1.23) 56226 56237.02 (208.0)* 950 950.16 (33.0)

*The simulator ran out of memory on 1000 parallel instances on the birth-death tree with λ = 10, so the result is shown for 100 instances.