Table 1. The mean and standard deviation (in parentheses) of the number of landscape changes on the given tree under the stochastic model with the Poisson parameter λ.
Tree | “Simple” | Saccharomyces mtDNA | Simulated birth-death | Metazoan mtDNA | ||||
#leaves: | 4 | 100 | 100 | 3558 | ||||
sum lengths: | 8 | 0.1585 | 5622.5 | 95.0 | ||||
expected | observed | expected | observed | expected | observed | expected | observed | |
λ = 0.1 | 0.8 | 0.8 (0.920) | 0.01585 | 0.0183 (0.135) | 5562.25 | 562.6 (24.0) | 9.5 | 9.69 (3.61) |
λ = 1 | 8 | 7.909 (2.83) | 0.1585 | 0.152 (0.404) | 5622.5 | 5623.956 (78.28) | 95 | 95.14 (9.69) |
λ = 10 | 80 | 79.96 (8.891) | 1.585 | 1.583 (1.23) | 56226 | 56237.02 (208.0)* | 950 | 950.16 (33.0) |
*The simulator ran out of memory on 1000 parallel instances on the birth-death tree with λ = 10, so the result is shown for 100 instances.