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Phylogenetic diversity of the ileal and caecal content microbiota at different ages. (A) The phylogenetic diversity (alpha diversity, at ASV level) was only significantly higher in the caecal content of AM chickens compared to controls on day 1 and day 3 (p < 0.05). (B) In the ileal content microbiota no differences were observed at any of the ages. n = 8 chickens per treatment per day of age, whiskers show 95% interval, box 50% interval.
