Skip to main content
. 2019 Nov 27;21(6):1937–1953. doi: 10.1093/bib/bbz122

Table 5.

Proteomic databases for DTD

Database Description Application
PRIDE Archive [84] The PRIDE is a public data repository for proteomics, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. https://www.ebi.ac.uk/pride/archive/ Drug target identification
ProteomicsDB [85] PDB is a large collection of quantitative MS-based proteomics data across various tissue types as well as protein–protein interaction information, functional annotation, target deconvolution, cell sensitivity and reference MS data. https://www.proteomicsdb.org/ Drug target identification
Drug target efficacy/potency
Human Proteome Map [88] Hosts high-resolution MS proteomic data representing 17 adult tissues, 6 primary hematopoietic cells and 7 fetal tissues resulting in >84% human proteome coverage. http://www.humanproteomemap.org/ Drug target identification
Biomarkers
Human proteome atlas [89] Collects expression and localization of majority of human protein-coding genes based on both RNA and protein data. The HPA also employs antibody-based proteomics and transcriptomics profiling methods to locate and identify proteins in tissues and cell types. http://www.proteinatlas.org/ Druggable proteome
Drug target efficacy and specificity