Table 2.

GenBank accession numbers of species included in the phylogenetic analysis (Figure 1). Ex-type/ex-epitype/ex-isotype/ex-neotype isolates are in bold.

Species Name	Isolate Number	ITS	tub	tef	cal	his	Reference
Diaporthella corylina	CBS 121124	KC343004	KC343972	KC343730	KC343246	KC343488	Vasilyeva et al. [54]
Diaporthe acaciarum	CBS 138862	KP004460	KP004509	N/A	N/A	KP004504	Crous et al. [55]
Diaporthe acuta	PSCG 047	MK626957	MK691225	MK654802	MK691125	MK726161	Guo et al. [15]
Diaporthe acuta	PSCG 046	MK626958	MK691224	MK654803	MK691124	MK726162	Guo et al. [15]
Diaporthe albosinensis	CFCC 53066	MK432659	MK578059	MK578133	MK442979	MK443004	Yang et al. [14]
Diaporthe albosinensis	CFCC 53067	MK432660	MK578060	MK578134	MK442980	MK443005	Yang et al. [14]
Diaporthe ampelina	CBS 114016	AF230751	JX275452	AY745056	AY230751	N/A	Mostert et al. [56]
Diaporthe ampelina	CBS 267.80	KC343018	KC343986	KC343744	KC343260	KC343502	Mostert et al. [56]
Diaporthe angelicae	CBS 111592	KC343027	KC343995	KC343753	KC343269	KC343511	Castlebury et al. [57]
Diaporthe angelicae	CBS 100871	KC343025	KC343993	KC343751	KC343267	KC343509	Castlebury et al. [57]
Diaporthe aquatica	IFRDCC 3015	JQ797438	N/A	N/A	N/A	N/A	Hu et al. [58]
Diaporthe aquatica	IFRDCC 3051	JQ797437	N/A	N/A	N/A	N/A	Hu et al. [58]
Diaporthe araucanorum	CBS 145285	MN509711	MN509722	MN509733	N/A	N/A	Zapata et al. [45]
Diaporthe araucanorum	CBS 145284	MN509710	MN509721	MN509732	N/A	N/A	Zapata et al. [45]
Diaporthe asheicola	CBS 136967	KJ160562	KJ160518	KJ160594	KJ160542	N/A	Lombard et al. [59]
Diaporthe asheicola	CBS 136968	KJ160563	KJ160519	KJ160595	KJ160543	N/A	Lombard et al. [59]
Diaporthe aspalathi	CBS 117168	KC343035	KC344003	KC343761	KC343277	KC343519	van Rensburg et al. [11]
Diaporthe aspalathi	CBS 117169	KC343036	KC344004	KC343762	KC343278	KC343520	van Rensburg et al. [11]
Diaporthe australafricana	CBS 111886	KC343038	KC344006	KC343764	KC343280	KC343522	Mostert et al. [56]
Diaporthe australafricana	CBS 113487	KC343039	KC344007	KC343765	KC343281	KC343523	Mostert et al. [56]
Diaporthe biconispora	ZJUD61	KJ490596	KJ490417	KJ490475	N/A	KJ490538	Huang et al. [60]
Diaporthe biconispora	ZJUD62	KJ490597	KJ490418	KJ490476	KJ490539	KJ490539	Huang et al. [60]
Diaporthe bohemiae	CBS 143347	MG281015	MG281188	MG281536	MG281710	MG281361	Guarnaccia et al. [19]
Diaporthe caryae	CFCC 52563	MH121498	MH121580	MH121540	MH121422	MH121458	Yang et al. [13]
Diaporthe caryae	CFCC 52564	MH121499	MH121581	MH121541	MH121423	MH121459	Yang et al. [13]
Diaporthe cercidis	CFCC 52565	MH121500	MH121582	MH121542	MH121424	MH121460	Yang et al. [13]
Diaporthe cercidis	CFCC 52566	MH121501	MH121583	MH121543	MH121425	MH121461	Yang et al. [13]
Diaporthe chongqingensis	PSCG 435	MK626916	MK691321	MK654866	MK691209	MK726257	Guo et al. [15]
Diaporthe chongqingensis	PSCG 436	MK626917	MK691322	MK654867	MK691208	MK726256	Guo et al. [15]
Diaporthe cichorii	MFLUCC 17-1023	KY964220	KY964104	KY964176	KY964133	N/A	Dissanayake et al. [9]
Diaporthe cinnamomi	CFCC 52569	MH121504	MH121586	MH121546	N/A	MH121464	Yang et al. [13]
Diaporthe cinnamomi	CFCC 52570	MH121505	MH121587	MH121547	N/A	MH121465	Yang et al. [13]
Diaporthe cissampeli	CPC 27302	KX228273	KX228384	N/A	N/A	KX228366	Crous et al. [61]
Diaporthe citri	CBS 135422	KC843311	KC843187	KC843071	KC843157	MF418281	Udayanga et al. [6]
Diaporthe citri	AR 4469	KC843321	KC843197	KC843081	KC843167	N/A	Udayanga et al. [6]
Diaporthe conica	CFCC 52571	MH121506	MH121588	MH121548	MH121428	MH121466	Yang et al. [13]
Diaporthe conica	CFCC 52572	MH121507	MH121589	MH121549	MH121429	MH121467	Yang et al. [13]
Diaporthe coryli	CFCC 53083	MK432661	MK578061	MK578135	MK442981	MK443006	Yang et al. [14]
Diaporthe coryli	CFCC 53084	MK432662	MK578062	MK578136	MK442982	MK443007	Yang et al. [14]
Diaporthe discoidispora	ZJUD89	KJ490624	KJ490445	KJ490503	N/A	KJ490566	Huang et al. [60]
Diaporthe discoidispora	ZJUD87	KJ490622	KJ490443	KJ490501	N/A	KJ490564	Huang et al. [60]
Diaporthe eres	AR 5193	KJ210529	KJ420799	KJ210550	KJ434999	KJ420850	Udayanga et al. [7]
Diaporthe eres	CBS 138598	KJ210521	KJ420787	KJ210545	KJ435027	KJ420837	Udayanga et al. [7]
Diaporthe foikelawen	CBS 145289	MN509714	MN509725	MN509736	N/A	N/A	Zapata et al. [45]
Diaporthe foikelawen	CBS 145287	MN509713	MN509724	MN509735	N/A	N/A	Zapata et al. [45]
Diaporthe fulvicolor	PSCG 051	MK626859	MK691236	MK654806	MK691132	MK726163	Guo et al. [15]
Diaporthe fulvicolor	PSCG 057	MK626858	MK691233	MK654810	MK691131	MK726164	Guo et al. [15]
Diaporthe gulyae	BRIP 53158	JF431284	KJ197271	N645799	N/A	N/A	Thompson et al. [62]
Diaporthe gulyae	BRIP 54025	JF431299	KJ197272	JN645803	N/A	N/A	Thompson et al. [62]
Diaporthe helicis	AR 5211	KJ210538	KJ420828	KJ210559	KJ435043	KJ420875	Udayanga et al. [7]
Diaporthe hungariae	CBS 143353	MG281126	MG281299	MG281647	MG281823	MG281474	Guarnaccia et al. [19]
Diaporthe hungariae	CBS 143354	MG281127	MG281300	MG281648	MG281824	MG281475	Guarnaccia et al. [19]
Diaporthe juglandicola	CFCC 51134	KU985101	KX024634	KX024628	KX024616	KX024622	Yang et al. [18]
Diaporthe mahothocarpus	CGMCC 3.15181	KC153096	KF576312	KC153087	N/A	N/A	Gao et al. [63]
Diaporthe mahothocarpus	CGMCC 3.15182	KC153097	N/A	KC153088	N/A	N/A	Gao et al. [63]
Diaporthe malorum	CAA734	KY435638	KY435668	KY435627	KY435658	KY435648	Santos et al. [16]
Diaporthe millettia	GUCC 9167	MK398674	MK502089	MK480609	MK502086	N/A	Long et al. [26]
Diaporthe nobilis	CBS 587.79	KC343153	KC344121	KC343879	KC343395	KC343637	Li et al. [25]
Diaporthe novem	CBS 127270	KC343155	KC344123	KC343881	KC343397	KC343640	Santos et al. [64]
Diaporthe novem	CBS 127271	KC343157	KC344125	KC343883	KC343399	KC343641	Santos et al. [64]
Diaporthe oraccinii	LC 3166	KP267863	KP293443	KP267937	N/A	KP293517	Gao et al. [63]
Diaporthe osmanthusis	GUCC 9165	MK398675	MK502090	MK480610	MK502087	N/A	Long et al. [26]
Diaporthe paranensis	CBS 133184	KC343171	KC344139	KC343897	KC343413	KC343655	Gomes et al. [4]
Diaporthe parvae	PSCG 034	MK626919	MK691248	MK654858	N/A	MK726210	Guo et al. [15]
Diaporthe parvae	PSCG 035	MK626920	MK691249	MK654859	MK691169	MK726211	Guo et al. [15]
Diaporthe pascoei	BRIP 54847	JX862532	KF170924	JX862538	N/A	N/A	Tan et al. [65]
Diaporthe passiflorae	CPC 19183	JX069860	KY435674	KY435633	KY435664	KY435654	Crous et al. [66]
Diaporthe patagonica	CBS 145291	MN509717	MN509728	MN509739	N/A	N/A	Zapata et al. [45]
Diaporthe patagonica	CBS 145755	MN509718	MN509729	MN509740	N/A	N/A	Zapata et al. [45]
Diaporthe perjuncta	CBS 109745	KC343172	KC344140	KC343898	KC343414	KC343656	van Niekerk et al. [67]
Diaporthe phragmitis	CBS 138897	KP004445	KP004507	N/A	N/A	KP004503	Crous et al. [55]
Diaporthe psoraleae	CBS 136412	KF777158	KF777251	KF777245	N/A	N/A	Crous et al. [68]
Diaporthe psoraleae-pinnatae	CBS 136413	KF777159	KF777252	N/A	N/A	N/A	Crous et al. [68]
Diaporthe pterocarpicola	MFLUCC 10-0580a	JQ619887	JX275441	JX275403	JX197433	N/A	Udayanga et al. [69]
Diaporthe pterocarpicola	MFLUCC 10-0580b	JQ619887	JX275441	JX275403	JX197433	N/A	Udayanga et al. [69]
Diaporthe pterocarpi	MFLUCC 10-0571	JX197433	JX275460	JX275416	JX197451	N/A	Udayanga et al. [69]
Diaporthe pterocarpi	MFLUCC 10-0575	JQ619901	JX275462	JX275418	JX197453	N/A	Udayanga et al. [69]
Diaporthe rostrata	CFCC 50062	KP208847	KP208855	KP208853	KP208849	KP208851	Fan et al. [17]
Diaporthe rostrata	CFCC 50063	KP208848	KP208856	KP208854	KP208850	KP208852	Fan et al. [17]
Diaporthe rudis	AR 3422	KC843331	KC843177	KC843090	KC843146	N/A	Udayanga et al. [6]
Diaporthe rudis	AR 3654	KC843338	KC843184	KC843097	KC843153	N/A	Udayanga et al. [6]
Diaporthe sackstonii	BRIP 54669b	KJ197287	KJ197267	KJ197249	N/A	N/A	Thompson et al. [70]
Diaporthe sennae	CFCC 51636	KY203724	KY228891	KY228885	KY228875	N/A	Yang et al. [18]
Diaporthe sennae	CFCC 51637	KY203725	KY228892	KY228886	KY228876	N/A	Yang et al. [18]
Diaporthe sennicola	CFCC 51634	KY203722	KY228889	KY228883	KY228873	KY228879	Yang et al. [18]
Diaporthe sennicola	CFCC 51635	KY203723	KY228890	KY228884	KY228874	KY228880	Yang et al. [18]
Diaporthe shaanxiensis	CFCC 53106	MK432654	N/A	MK578130	MK442976	MK443001	Yang et al. [14]
Diaporthe shaanxiensis	CFCC 53107	MK432655	N/A	MK578131	MK442977	MK443002	Yang et al. [14]
Diaporthe sojae	BRIP 54033	JF431295	N/A	KC343901	N/A	N/A	Udayanga et al. [71]
Diaporthe sojae	CBS 116019	KC343175	KC344143	KC343901	KC343417	KC343659	Udayanga et al. [71]
Diaporthe sojae	FAU 455	KJ590712	KJ610868	KJ590755	KJ612109	KJ659201	Udayanga et al. [71]
Diaporthe sojae	FAU 635	KJ590719	KJ610875	KJ590762	KJ612116	KJ659208	Udayanga et al. [71]
Diaporthe spartinicola	CPC 24951	KR611879	KR857695	N/A	N/A	KR857696	Crous et al. [71]
Diaporthe spinosa	PSCG 383	MK626849	MK691234	MK654811	MK691129	MK726156	Guo et al. [15]
Diaporthe spinosa	PSCG 279	MK626925	MK691235	MK654801	MK691126	MK726155	Guo et al. [15]
Diaporthe subordinaria	CBS 464.90	KC343214	KC344182	KC343940	KC343456	KC343698	Gomes et al. [4]
Diaporthe subordinaria	CBS 101711	KC343213	KC344182	KC343939	KC343455	KC343697	Gomes et al. [4]
Diaporthe taoicola	MFLUCC 16-0117	KU557567	KU557591	KU557635	N/A	N/A	Dissanayake et al. [9]
Diaporthe torilicola	MFLUCC 17-1051	KY964212	KY964096	KY964168	KY964127	N/A	Dissanayake et al. [9]
Diaporthe toxica	CBS 534.93	KC343220	KC344188	KC343946	KC343462	KC343704	Williamson et al. [72]
Diaporthe toxica	CBS 546.93	KC343222	KC344190	KC343948	KC343464	KC343706	Williamson et al. [72]
Diaporthe vangueriae	CPC 22703	KJ869137	KJ869247	N/A	N/A	N/A	Crous et al. [55]
Diaporthe vawdreyi	BRIP 57887a	KR936126	KR936128	KR936129	N/A	N/A	Crous et al. [73]
Diaporthe zaobaisu	PSCG 031	MK626922	MK691245	MK654855	N/A	MK726207	Guo et al. [15]
Diaporthe zaobaisu	PSCG 032	MK626923	MK691246	MK654856	N/A	MK726208	Guo et al. [15]

AR: Collection of A.Y. Rossman; BRIP: Queensland Plant Pathology herbarium/culture collection, Australia; CBS: Culture collection of the Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, Utrecht, The Netherlands; CFCC: China Forestry Culture Collection Center, China; CGMCC: China General Microbiological Culture Collection; CPC: Collection Pedro Crous, housed at CBS; FAU: Isolates in culture collection of Systematic Mycology and Microbiology Laboratory, USDA-ARS, Beltsville, MD, USA; GUCC: Guizhou culture collection, Guizhou, China; IFRDCC: International Fungal Research and Development Centre Culture Collection, Chinese Academy of Forestry, Kunming, China; LC: Corresponding author’s personal collection (deposited in laboratory State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences); MFLUCC: Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; ZJUD: Zhejiang University. ITS, internal transcribed spacers 1 and 2 together with 5.8S nrDNA; tub, partial beta-tubulin gene; cal, partial calmodulin gene and tef, partial translation elongation factor 1-a gene, his, histone H3 gene.