Table 2.
Reference strains and clinical isolates used to generate the phylogenetic tree based on sequencing of the ITS region of rDNA and the TEF1-α gene. GenBank accession numbers of the nucleotide sequences used in this study are available at the NCBI. Abbreviations: NCBI, National Center for Biotechnology Information, Bethesda, Maryland; ITS, internal transcribed spacer; rDNA, ribosomal DNA; TEF1-α, translation elongation factor 1-α; CBS, Centraal Bureau voor Schimmelcultures (today, Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands); DSM, T. mentagrophytes Deutsche Sammlung von Mikroorganismen und Zellkulturen (German Collection of Microorganisms and Cell Cultures), Braunschweig, Germany; ATCC, American Type Culture Collection (Manassas, VA, USA). * means a subtype of the genotype II.
| Species/Genotype | Strain | Collection | Accession No. NCBI ITS | Accession No. NCBI TEF1-α |
|---|---|---|---|---|
| T. interdigitale ITS genotype I | 208223/17 | DSM 108620 | MK447595 | MK460538 |
|
T. interdigitale ITS genotype I deposited in the NCBI as T. interdigitale |
Isolate 2 | KC595991 | ||
| T. interdigitale ITS genotype II | 200070/17 | DSM 108621 | MK447596 | MK460539 |
|
T. interdigitale ITS genotype II deposited in the NCBI as T. interdigitale |
RCPF-1301 | KP308373 | ||
|
T. interdigitale ITS genotype II deposited in the NCBI as T. interdigitale |
CBS 475.93 | MF926357 | ||
|
T. interdigitale ITS genotype II deposited in the NCBI as T. interdigitale |
CBS 428.63 | NR_144900 | ||
|
T. interdigitale ITS genotype II deposited in the NCBI as T. mentagrophytes |
CBS 647.73 | KT155955 | ||
|
T. mentagrophytes deposited in the NCBI as T. mentagrophytes |
CBS 102.68 | KM678062 | ||
| T. interdigitale ITS genotype II * | 212063/17 | DSM 108905 | MK630684 | MK751367 |
| T. interdigitale ITS genotype II * | 250016/18 | MN886818 | MN886231 | |
| T. mentagrophytes | CBS 116916 | KM678130 | ||
| T. interdigitale | CBS 130940 | KM678173 | ||
| T. mentagrophytes ITS genotype III | 217704/15 | DSM 108630 | MK450325 | MK460541 |
| T. mentagrophytes ITS genotype III | 200002/16 | DSM 103451 | KX866689 | MK460540 |
| ITS genotype III deposited in the NCBI as T. cf. mentagrophytes |
ATCC 60612 | KJ606099 | ||
|
T. mentagrophytes ITS genotype III deposited in the NCBI as T. mentagrophytes |
RCPF-1207 | KT253559 | ||
| T. mentagrophytes ITS genotype III * | 217907/15 | DSM 108628 | MK447605 | MK460542 |
| T. mentagrophytes ITS genotype III * | 218893/16 | DSM 108629 | MK447604 | MK460543 |
| T. mentagrophytes ITS genotype III * | 900120/17 | DSM 108632 | MK447606 | MK460544 |
|
T. mentagrophytes ITS genotype III * deposited in the NCBI as T. interdigitale |
CZE 4473 | LN736306 | ||
| T. mentagrophytes ITS genotype IV | 200602/17 | DSM 108631 | MK447607 | MK467447 |
| T. mentagrophytes ITS genotype IV | 200617/17 | DSM 108627 | MK447608 | MK467446 |
| T. mentagrophytes ITS genotype IV | 204543/17 | DSM 108626 | MK447609 | MK467445 |
|
T. mentagrophytes ITS genotype IV deposited in the NCBI as T. mentagrophytes |
CBS 304.38 | MF926360 | ||
|
T. mentagrophytes ITS genotype IV deposited in the NCBI as T. interdigitale |
SJEK 4836 | FM986773 | ||
|
T. mentagrophytes ITS genotype V deposited in the NCBI as T. cf. mentagrophytes |
ATCC 46950 | KJ606098 | ||
| T. mentagrophytes ITS genotype V | 600014/20 | MT374268 | MT375511 | |
| T. mentagrophytes ITS genotype V | 600024/20 | MT374269 | MT375512 | |
| T. mentagrophytes ITS genotype V | 600184/19 | MT374259 | MT375508 | |
| T. mentagrophytes ITS genotype V | 600197/19 | MT374258 | MT375509 | |
| T. mentagrophytes ITS genotype V | 600316/19 | MT374257 | MT375510 | |
|
T. mentagrophytes ITS genotype VI deposited in the NCBI as T. mentagrophytes |
D15P161/17 | MK722518 | - | |
| T. mentagrophytes ITS genotype VII | 210363/16 | DSM 108625 | MK450323 | MK467450 |
| T. mentagrophytes ITS genotype VII | 218904/16 | DSM 108622 | MK450322 | MK467448 |
| T. mentagrophytes ITS genotype VII | 200128/17 | DSM 108623 | MK447611 | MK460545 |
| T. mentagrophytes ITS genotype VII | 215003/16 | DSM 108624 | MK450324 | MK467449 |
|
T. mentagrophytes ITS genotype VII deposited in the NCBI as T. mentagrophytes |
NBRC 5809 | JN134101 | ||
| T. mentagrophytes ITS genotype VIII | 211509/17 | DSM 107597 | MH791420 | MH802491 |
| T. mentagrophytes ITS genotype VIII | 200095/18 | DSM 107602 | MH791425 | MH802496 |
| T. mentagrophytes ITS genotype VIII deposited in the NCBI as T. interdigitale |
VPCI 390/P/17 | - | MH990852 | |
| T. mentagrophytes ITS genotype IX | 214691/17 | DSM 108357 | MK447613 | MK467444 |
| T. mentagrophytes ITS genotype XXV | 218292/17 | - | MN886815 | MN886229 |
| T. mentagrophytes ITS genotype XXV | 201341/18 | - | MN886816 | MN886230 |
| T. quinckeanum | 218251/16 | |||
| T. quinckeanum | 210314/16 | |||
| T. quinckeanum | ATCC 32457 | KJ606088 | ||
| T. quinckeanum | 216686/15 | KY680503 | KY680502 |