Table 2.
Distribution of risk allele frequency and association analyses of variants with genotyping call greater than 95%.
| S.No | Gene | SNPs | Frequency in cases | Frequency in control | HWE | OR 95% CI | p value | OR* 95% CI (dominant model) | p value * (dominant model) | PAR |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CYP19A1 | rs10046 | A = 0.3447 | A = 0.3 | 0.6271 | 1.2 (0.9–1.5) | 0.12 | 1.36 (0.946–1.97) | 0.95 | – |
| G = 0.6553 | G = 0.7 | |||||||||
| 2 | PIK3CA | rs2699887 | T = 0.259 | T = 0.185 | 0.0682 | 1.5 (1.1–2.0) | 0.003 | 1.72 (1.19–2.48) | 0.004 | 25.93 |
| C = 0.741 | C = 0.815 | |||||||||
| 3 | FGFR2 | rs2981582 | A = 0.3613 | A = 0.3325 | 0.4957 | 1.1 (0.8–1.4) | 0.33 | 1.30 (0.89–1.88) | 0.165 | – |
| G = 0.6387 | G = 0.6675 | |||||||||
| 4 | GSTP1 | rs1695 | G = 0.2539 | G = 0.1941 | 0.872 | 1.4 (1.0–1.8) | 0.01 | 1.87 (1.28–2.71) | 0.001 | 39.2 |
| A = 0.7461 | A = 0.8059 | |||||||||
| 5 | ERCC1 | rs2298881 | A = 0.2356 | A = 0.3029 | 0.9036 | 0.7 (0.53–0.94) | 0.01 | 0.66 (0.46–0.96) | 0.03 | – |
| C = 0.7644 | C = 6971 | |||||||||
| 6 | ERCC5 | rs751402 | A = 0.2216 | A = 0.2552 | 0.5037 | 0.8 (0.6–1.1) | 0.21 | 0.71 (0.48–1.03) | 0.07 | – |
| G = 0.7784 | G = 0.7448 |
*Adjusted with age and BMI.