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. 2020 Dec 3;11:115. doi: 10.1186/s40104-020-00520-8

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Manhattan plots and Quantile-Quantile (QQ) plots for six phenotypes of pig biological characteristics. There were three types of genome variants plotted in Manhattan plots, in which blue triangles represent CNVs, green diamonds represent InDels, and purple circles represent SNPs. Only the genome variants with genome-wide significant P-values were plotted in Manhattan plots, and the P-values were corrected by the Bonferroni cutoff, which was defined by 0.05/N, where N represents the number of genome variants for each independent GWAS. For QQ plots, the X-axis represents the expected −log₁₀(P), and the y-axis represents the observed −log₁₀(P)