Table 2.
Genotype frequencies and log‐rank P values for VEGFA and VEGFR2 polymorphisms in patients with diffuse large B cell lymphoma
Gene | ID no. | Base change | Genotype | Log‐rank P for OS | Log‐rank P for PFS | MAF in healthy population | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MAF | HWE P | Additive | Dominant | Recessive | Additive | Dominant | Recessive | Korean | Asian | European† | African† | |||
VEGFA | rs699947 | −2578C>A | 0.226 | 0.997 | 0.429 | 0.629 | 0.194 | 0.530 | 0.485 | 0.464 | 0.340‡ | 0.318 | 0.408 | 0.117 |
rs2010963 | +405G>C | 0.337 | 0.687 | 0.882 | 0.991 | 0.650 | 0.812 | 0.940 | 0.562 | 0.519§ | 0.352 | 0.431 | 0.340 | |
rs3025039 | +936C>T | 0.154 | 0.055 | 0.497 | 0.543 | 0.437 | 0.289 | 0.348 | 0.318 | 0.206§ | 0.182 | 0.186 | 0.068 | |
VEGFR2 | rs1870377 | +1416T>A | 0.322 | 0.253 | 0.004 | 0.002 | 0.021 | 0.010 | 0.004 | 0.049 | – | 0.344 | 0.275 | 0.117 |
rs2305948 | +1192G/A | 0.121 | 0.463 | 0.966 | 0.823 | 0.929 | 0.997 | 0.968 | 0.953 | – | 0.078 | 0.067 | 0.292 |
In the reference sequence, the transcription start site was designated nt +1. †Information about polymorphism ID and MAF in other ethnic populations (Asian, European and African‐American) were obtained from the National Center for Biotechnology Information database (http://www.ncbi.nlm.nih.gov). ‡From reference 43. §From reference 44. HWE, Hardy–Weinberg equilibrium; ID, identification; MAF, minor allele frequency; OS, overall survival; PFS, progression‐free survival; VEGFA, vascular endothelial growth factor A; VEGFR2, vascular endothelial growth factor receptor 2.