Table 1. Primers for kdr-like diagnostic PCR and Nav gene fragments amplification and sequencing.
Name | Sequence (5’→3’) | Genome nucleotide positionΦ (VectorBase: CPIJ017894) | Purpose | Final conc. [nM] |
---|---|---|---|---|
ControlF | AAT CAG ACA ACG TGG ACC GCT TCC | A92919-C92896 | Diagnostic PCR | 125 |
ControlR | GTT TTT CGT TCC CAC CTT TTC TTG CAT GC | C92628-G92653 | Diagnostic PCR | 150 |
ResistantF | TTC TTG GCC ACC GTA GTG ATA GGA AAT TTT | T92758-A92729 | Diagnostic PCR | 150 |
SusceptibleR | TAA GAC TTC ACG CTG GAA TAC TCA CGA CT | A92701-A92729 | Diagnostic PCR | 250 |
SeqFPCR | CAT TCA CAC TGG CTT CCA ATT TCG ACT AG | C93037-G93009 | Amplify PCR products to be sequenced | 500 |
SeqRPCR | GGA CGC AAT CTG GCT TGT TAA CTT GTT T | G92188-T92215 | Amplify PCR products to be sequenced | 500 |
SequencingF | GAC AAC GTG GAC CGC TTC CCA A | G92914-C92895 | Sequencing | 5000 |
Φ The reverse strand of the annotated gene, CPIJ017894, in the genome SuperContig 3.1170 in VectorBase encodes a partial sequence of the Cx. quinquefasciatus Nav channel (sense strand) (see S1 Fig). The nucleotide positions shown here are as numbered in VectorBase.