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. 2020 Sep 26;27(12):3274–3289. doi: 10.1016/j.sjbs.2020.09.041

Table 9.

The inter-molecular interactions of the phytocompounds with sPLA2-IIA (PDB Id: 5G3N) refined by molecular dynamics simulations.

Inhibitor Pi-Donor Hydrogen Bond Carbon Hydrogen Bond Pi-Sulphur Pi-Pi Stacked Pi-Pi T-shaped Amide-Pi Stacked Alkyl Pi-Alkyl Contact Residues
Methanone Gly29 Cys44 Phe5 Gly29 Leu2, Ile9, Ala17, Ala18, Val30 Leu2, Phe5, His6[2], His47, Lys62 Ala1, Tyr21, Gly22, His27, Cys28, Tyr51, Phe63, Ala94, Phe98
Oxazole Gly22 His47, Tyr51 Ala1, Lys62 Leu2, Phe5, His6, Ile9, Ala17, Ala18, Tyr21, Gly29, Val30, Cys44, Asp48, Tyr61, Phe98
Bis-Phenylethyl Phe5, His6 Phe5 Phe5, Ala17, His47, Tyr51, Lys62 Leu2, Ile9, Ala18, Tyr21, Gly22, Cys28, Gly29, Val30