Table 3.

Sire-breed differences among correlations between genotypes imputed from downsampled sequence and called from transcript sequence.

	Correlation (r) Scale			−log(1−r) Scale
Sire Breed	Effect a	SE	p Value	Effect a	SE	p Value
Red Angus	4.60 × 10−4	4.92 × 10−3	9.26 × 10−1	−0.07	0.21	7.52 × 10−1
Brahman	−2.79 × 10−2	3.81 × 10−3	1.59 × 10−9	1.86	0.16	8.17 × 10−16
Beefmaster	−2.08 × 10−2	3.36 × 10−3	1.01 × 10−7	1.60	0.14	1.78 × 10−15
Brangus	−1.05 × 10−2	3.11 × 10−3	1.37 × 10−3	1.15	0.13	1.25 × 10−11
Charolais	−2.02 × 10−3	3.36 × 10−3	5.50 × 10−1	0.36	0.14	1.55 × 10−2
ChiAngus	−2.48 × 10−3	4.92 × 10−3	6.16 × 10−1	0.40	0.21	6.38 × 10−2
South Devon	−2.54 × 10−3	6.60 × 10−3	7.02 × 10−1	0.44	0.28	1.22 × 10−1
Gelbvieh	−1.63 × 10−3	3.81 × 10−3	6.71 × 10−1	0.29	0.16	7.83 × 10−2
Hereford	−6.70 × 10−4	3.55 × 10−3	8.51 × 10−1	0.13	0.15	4.10 × 10−1
Limousin	−1.80 × 10−3	6.60 × 10−3	7.86 × 10−1	0.34	0.28	2.34 × 10−1
Maine-Anjou	−3.20 × 10−4	4.92 × 10−3	9.48 × 10−1	0.09	0.21	6.72 × 10−1
Salers	−2.75 × 10−3	3.81 × 10−3	4.74 × 10−1	0.47	0.16	5.95 × 10−3
Braunveih	−3.89 × 10−3	4.92 × 10−3	4.33 × 10−1	0.61	0.21	5.66 × 10−3
Simmental	−2.57 × 10−4	4.21 × 10−3	9.52 × 10−1	0.07	0.18	6.79 × 10−1
Shorthorn	−1.25 × 10−3	3.55 × 10−3	7.62 × 10−1	0.24	0.15	1.22 × 10−1
Santa Gertrudis	−2.21 × 10−2	3.36 × 10−3	2.34 × 10−8	1.66	0.14	5.55 × 10−15

^a Difference from Angus.