Table 1.
Predicted localization, domains, and function for Pap proteins in Pseudomonas fluorescens F113.
| Protein (PSF113_) | Length (Amino Acids) | Cellular Localization 1 | Transmembrane Domains 1 | Domain No. 1 | Predicted Function |
|---|---|---|---|---|---|
| PapA (PSF113_1970) | 454 | Cytoplasmic | 0 | 3 | UDP-glucose 6-dehydrogenase |
| PapB (PSF113_1969) | 352 | Cytoplasmic | 0 | 5 | NAD-dependent epimerase/dehydratase |
| PapC (PSF113_1968) | 248 | Inner membrane | 1 | 1 | Undecaprenyl-phosphate galactose phosphotransferase/Glycosyltransferase |
| PapD (PSF113_1967) | 214 | Inner membrane | 0 | 1 | Protein EpsD/CpsD/CapB family tyrosine-kinase protein |
| PapE (PSF113_1966) | 340 | Outer membrane | 0 | 3 | Putative polysaccharide biosynthesis/export family protein |
| PapF (PSF113_1965) | 530 | Inner membrane | 2 | 1 | Lipopolysaccharide biosynthesis protein/Chain length determinant |
| PapG (PSF113_1964) | 367 | Cytoplasmic | 0 | 5 | Group 4 glycosyl transferase |
| PapH (PSF113_1963) | 456 | Inner membrane | 11 | 1 | Hypothetical protein/Polymerase/O-Antigen ligase family protein |
| PapI (PSF113_1962) | 319 | Inner membrane | 1 | 4 | Group 2 glycosyl transferase family protein |
| PapJ (PSF113_1961) | 378 | Inner membrane | 4 | 5 | Group 2 glycosyl transferase family protein |
| PapK (PSF113_1960) | 334 | Cytoplasmic | 0 | 1 | Polysaccharide deacetylase |
| PapL (PSF113_1959) | 434 | Inner membrane | 9 | 3 | Polysaccharide biosynthesis membrane protein/Oligosaccharide flippase family protein |
| PapM (PSF113_1958) | 658 | Periplasmic | 1 | - | Hypothetical protein |
| PapN (PSF113_1957) | 229 | Cytoplasmic | 0 | - | Hypothetical protein |
| PapO (PSF113_1956) | 391 | Cytoplasmic | 0 | 1 | Cellulose biosynthesis protein/GNAT family N-acetyltransferase |
| PapP (PSF113_1955) | 260 | Cytoplasmic | 0 | 1 | Cellobiose phosphotransferase system YdjC-like protein |
1 Additional information in Supplementary Table S4.