Table 5.
NCBI prokaryotic Genome Annotation pipeline V. anguillarum J360 genome annotation summary.
| Attribute | Data Provided |
|---|---|
| Annotation pipeline | NCBI |
| Annotation method | Best placed reference protein set; GeneMarks v4.6 |
| Genes (total) | 4371 |
| CDSs (total) | 4234 |
| Genes (coding) | 3966 |
| Genes (RNA) | 137 |
| rRNAs | 10, 9, 9 (5S, 16S, 23S) |
| Complete rRNAs | 10, 9, 9 (5S, 16S, 23S) |
| tRNAs | 105 |
| ncRNAs | 4 |
| Pseudogenes (total) | 268 |
| Pseudogenes (ambiguous residues) | 0 of 268 |
| Pseudogenes (frameshifted) | 105 of 268 |
| Pseudogenes (incomplete) | 163 of 268 |
| Pseudogenes (internal stop) | 45 of 268 |
| Pseudogenes (multiple problems) | 41 of 268 |