Table 3. mRNA targets for BbsR9, as predicted by the indicated algorithms.
| Rank | TargetRNA2 | IntaRNA | CopraRNA |
|---|---|---|---|
| 1 | nuoF (0.0001) | gcvT (0.0033) | RS06660 (0.0013) |
| 2 | RS01360 (0.012) | RS01025 (0.0043) | nuoF (0.0103) |
| 3 | czrB (0.004) | trmD (0.0060) | RS02895 (0.0113) |
| 4 | ftsE (0.010) | ftsH (0.0071) | gcvT (0.0153) |
| 5 | RS05725 (0.012) | RS02100 (0.0090) | RS02955 (0.0232) |
| 6 | rplX (0.033) | DUF475 (0.0125) | efp (0.0286) |
| 7 | flgC (0.043) | Pseudogene (0.0132) | ftsH (0.0288) |
| 8 | aroP (0.044) | tonB (0.0136) | trmD (0.0477) |
| 9 | hflK (0.0148) | ||
| 10 | nuoF (0.0276) |
p-values < 0.05 are indicated in parentheses; bolded gene targets were chosen for further study.